A comprehensive resource for retrieving, visualizing, and integrating functional genomics data
Journal article, 2020

The enormous amount of freely accessible functional genomics data is an invaluable resource for interrogating the biological function of multiple DNA-interacting players and chromatin modifications by large-scale comparative analyses. However, in practice, interrogating large collections of public data requires major efforts for (i) reprocessing available raw reads, (ii) incorporating quality assessments to exclude artefactual and low-quality data, and (iii) processing data by using high-performance computation. Here, we present qcGenomics, a user-friendly online resource for ultrafast retrieval, visualization, and comparative analysis of tens of thousands of genomics datasets to gain new functional insight from global or focused multidimensional data integration. © 2019 Blum et al.

Author

Matthias Blum

IGBMC Institut de Genetique et de Biologie Moleculaire et Cellulaire

European Bioinformatics Institute

Pierre-Etienne Cholley

IGBMC Institut de Genetique et de Biologie Moleculaire et Cellulaire

Chalmers, Biology and Biological Engineering, Systems and Synthetic Biology

Valeriya Malysheva

Imperial College London

IGBMC Institut de Genetique et de Biologie Moleculaire et Cellulaire

Medical Research Council

Samuel Nicaise

IGBMC Institut de Genetique et de Biologie Moleculaire et Cellulaire

CHU Strasbourg

Julien Moehlin

IGBMC Institut de Genetique et de Biologie Moleculaire et Cellulaire

University of Évry Val d'Essonne

Hinrich Gronemeyer

Inserm Transfert

University of Strasbourg

Centre national de la recherche scientifique (CNRS)

IGBMC Institut de Genetique et de Biologie Moleculaire et Cellulaire

Marco Antonio Mendoza-Parra

University of Évry Val d'Essonne

IGBMC Institut de Genetique et de Biologie Moleculaire et Cellulaire

Centre national de la recherche scientifique (CNRS)

Life Science Alliance

25751077 (eISSN)

Vol. 3 1 e201900546

Subject Categories

Other Computer and Information Science

Bioinformatics (Computational Biology)

Bioinformatics and Systems Biology

DOI

10.26508/lsa.201900546

PubMed

31818883

More information

Latest update

2/9/2021 6