Genesis-DB: a database for autonomous laboratory systems
Journal article, 2023

Artificial intelligence (AI)-driven laboratory automation - combining robotic labware and autonomous software agents - is a powerful trend in modern biology. We developed Genesis-DB, a database system designed to support AI-driven autonomous laboratories by providing software agents access to large quantities of structured domain information. In addition, we present a new ontology for modeling data and metadata from autonomously performed yeast microchemostat cultivations in the framework of the Genesis robot scientist system. We show an example of how Genesis-DB enables the research life cycle by modeling yeast gene regulation, guiding future hypotheses generation and design of experiments. Genesis-DB supports AI-driven discovery through automated reasoning and its design is portable, generic, and easily extensible to other AI-driven molecular biology laboratory data and beyond.

Author

Gabriel Reder

Chalmers, Life Sciences, Systems and Synthetic Biology

Alexander Gower

Chalmers, Computer Science and Engineering (Chalmers), Data Science and AI

Filip Kronström

Chalmers, Computer Science and Engineering (Chalmers), Data Science and AI

Rushikesh Halle

Thoughtworks

Vinay Mahamuni

Thoughtworks

Amit Patel

Thoughtworks

Harshal Hayatnagarkar

Thoughtworks

Larisa N. Soldatova

Goldsmiths, University of London

Ross King

Chalmers, Computer Science and Engineering (Chalmers), Data Science and AI

University of Cambridge

Alan Turing Institute

Bioinformatics Advances

26350041 (eISSN)

Vol. 3 1 vbad102

Subject Categories

Signal Processing

Computer Science

DOI

10.1093/bioadv/vbad102

More information

Latest update

9/22/2023