Fredrik Boulund

Publications (19)
Projects (0)

Showing 19 publications

2020

Discovery of Species-unique Peptide Biomarkers of Bacterial Pathogens by Tandem Mass Spectrometry-based Proteotyping

Roger Karlsson, Annika Thorsell, Margarita Gomila et al

Molecular and Cellular Proteomics. Vol. 19 (3), p. 518-528

Journal article

2018

Proteotyping bacteria: Characterization, differentiation and identification of pneumococcus and other species within the Mitis Group of the genus Streptococcus by tandem mass spectrometry proteomics

Roger Karlsson, Lucia Gonzales-Siles, Margarita Gomila et al

PLoS ONE. Vol. 13 (12)

Journal article

2017

Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data sets

Fredrik Boulund, Fanny Berglund, Carl-Fredrik Flach et al

BMC Genomics. Vol. 18 (1), p. Art 682-

Journal article

2017

Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics

Fredrik Boulund, R. Karlsson, L. Gonzales-Siles et al

Molecular and Cellular Proteomics. Vol. 16 (6), p. 1052-1063

Journal article

2016

Draft genome sequence of extended-spectrum-β-lactamase-producing Escherichia coli strain CCUG 62462, isolated from a urine sample

Anna Johnning, Hedvig E Jakobsson, Fredrik Boulund et al

Genome Announcements. Vol. 4 (6), p. e01382-16

Journal article

2016

Proteotyping of Streptococcus pneumoniae, using tandem mass spectrometry for identification of biomarkers for species and strain differentiation

Hedvig E Jakobsson, Lucia Gonzales-Siles, Roger Karlsson et al

11th International Meeting on Microbial Epidemiological Markers (IMMEM XI) 9 - 12 March 2016, Estoril, Portugal

Other conference contribution

2016

Strategies to improve usability and preserve accuracy in biological sequence databases

Johan Bengtsson-Palme, Fredrik Boulund, Robert Edström et al

Proteomics. Vol. 16 (18), p. 2454-2460

Journal article

2016

Proteotyping: Tandem Mass Spectrometry Shotgun Proteomic Characterization and Typing of Pathogenic Microorganisms

Roger Karlsson, Lucia Gonzales-Siles, Fredrik Boulund et al

MALDI‐TOF and Tandem MS for Clinical Microbiology, p. 419-450

Book chapter

2015

Tentacle: distributed quantification of genes in metagenomes

Fredrik Boulund, Anders Sjögren, Erik Kristiansson

GigaScience. Vol. 4 (1), p. artikel nr 40-

Journal article

2015

Computational methods for analysis of fragmented sequence data

Fredrik Boulund

Doctoral thesis

2015

In vitro assessment of platelet concentrates with multiple electrode aggregometry.

Caroline Andersson Shams Hakimi, Camilla Hesse, Håkan Wallén et al

Platelets. Vol. 26 (2), p. 132-137

Journal article

2014

Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India

Johan Bengtsson-Palme, Fredrik Boulund, Jerker Fick et al

Frontiers in Microbiology. Vol. 5 (648)

Journal article

2013

Analysis of large-scale metagenomic data

Fredrik Boulund

Licentiate thesis

2013

Functional verification of computationally predicted qnr genes

Carl-Fredrik Flach, Fredrik Boulund, Erik Kristiansson et al

Annals of Clinical Microbiology and Antimicrobials. Vol. 12 (1), p. artikel nr 34-

Journal article

2012

A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences

Fredrik Boulund, Anna Johnning, Mariana Buongermino Pereira et al

BMC Genomics. Vol. 13 (1), p. 695-

Journal article

2012

Comprehensive Analysis of Antibiotic Resistance Genes Using Metagenomic DNA Sequencing: Studies of Contaminated River Sediment, Well Water and Soil Microbial Communities

Johan Bengtsson, Fredrik Boulund, Jerker Fick et al

ISME14 Conference, Copenhagen, Denmark, 2012-08-20

Conference poster

2012

Comprehensive Analysis of Antibiotic Resistance Genes Using Metagenomic DNA Sequencing: Studies of Contaminated River Sediment, Well Water and Soil Microbial Communities

Johan Bengtsson, Fredrik Boulund, Jerker Fick et al

SocBiN Bioinformatics Conference 2012, Stockholm, Sweden, 2012-06-11

Conference poster

2011

Exploring the metagenomes of environmental antibiotic hotspots to identify resistance factors that we may face in the clinic tomorrow

D. G. Joakim Larsson, Anders Janzon, Anna Johnning et al

SETAC Europe 21st Annual Meeting; Ecosystem Protection in a Sustainable World: A challenge for Science and Regulation 15-19 May 2011, p. 38-

Conference poster

2009

An analytical solution for finding voids and bottlenecks within macromolecules

Fredrik Boulund, Viktor Jonsson, Erik Sterner et al

3DSig 2009: The 5th Structural Bioinformatics and Computational Biophysics Meeting, Stockholm, Sweden, 27-28 June 2009, p. 77-78

Conference poster

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