Graham Kemp

2024

Redefining urban digital twins for the federated data spaces ecosystem: A perspective

Computational protein modelling based on limited sets of constraints

Computation of Binding Energies Including Their Enthalpy and Entropy Components for Protein-Ligand Complexes Using Support Vector Machines

Standardizing radiation oncology data for future modelling of side effects after radiation therapy

Data Integration in the Life Sciences 7th International Conference, DILS 2010, Gothenburg, Sweden, August 25-27, 2010. Proceedings

Identification of protein binding surfaces using surface triplet propensities

2010

An automated framework for understanding structural variations in the binding grooves of MHC class II molecules

STP: A Program to Predict Protein Binding Surfaces

2009

Predicting functional upstream open reading frames in Saccharomyces cerevisiae

An analytical solution for finding voids and bottlenecks within macromolecules

Deriving binding site signatures in MHC Class II molecules, using a novel algorithm

Uniform Query Processing in a Federation of RDFS and Relational Resources

An Ontology-Based Approach to Car Simulation and Design

A Functional Data Model Approach to Querying RDF/RDFS Data

Using mRNA Secondary Structure Predictions Improves Recognition of Known Yeast Functional uORFs

Using long fragments to reconstruct RNA backbones

Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation

Using surface patch profiles to predict protein-protein binding surfaces

PROPHECY—a yeast phenome database, update 2006

Using Inductive Logic Programming to Predict Functional Upstream Open Reading Frames in Yeast

Capturing Quantified Constraints in FOL, Through Interaction with a Relationship Graph

A First Step towards Learning which uORFs Regulate Gene Expression

PROPHECY - a database for high-resolution phenomics

Conformation of the exopolysaccharide of Burkholderia cepacia predicted with molecular mechanics (MM3) using genetic algorithm search.

Using the Functional Data Model to Store and Query Recursive Biological Data

Models of Database Interconnectivity

The use of a genetic algorithm search for molecular mechanics (MM3)-based conformational analysis of oligosaccharides.

Predicting peptide interactions with model class II MHC structures

Pathway and Protein Interaction Data: from XML to FDM Database

An Expressive Functional Data Model and Query Language for Bioinformatics Data Integration

Analysis of Fish IL-1beta and Derived Peptide Sequences Indicates Conserved Structures with Species-Specific IL-1 Receptor Binding: Implications for Pharmacological Design

Optimisation Strategies for Functional Queries in a Distributed Environment

P/FDM Mediator for a Bioinformatics Database Federation

Architecture of a mediator for a bioinformatics database federation

Modelling Biological Data in Hierarchies