Graham Kemp

Professor at Chalmers, Computer Science and Engineering (Chalmers), Data Science

Link to personal page

Source: chalmers.se

Showing 34 publications

2016

Computational protein modelling based on limited sets of constraints

Maryana Wånggren, Martin Billeter, Graham Kemp
Proceedings of the 12th International Workshop on Constraint-Based Methods for Bioinformatics, p. 99-113
Paper in proceedings
2013

Computation of Binding Energies Including Their Enthalpy and Entropy Components for Protein-Ligand Complexes Using Support Vector Machines

Ashok Krishna Chaitanya Koppisetty, M. Frank, Graham Kemp et al
Journal of Chemical Information and Computer Sciences. Vol. 53 (10), p. 2559-2570
Journal article
2011

Standardizing radiation oncology data for future modelling of side effects after radiation therapy

Caroline Olsson, Graham Kemp
1st International Workshop on Managing Interoperability and compleXity in Health Systems, MIXHS'11, Collocated with the 20th ACM International Conference on Information and Knowledge Management, CIKM 2011 Glasgow 28 October 2011 through 28 October 2011. Vol. oct 28, p. 67-70
Paper in proceedings
2010

Identification of protein binding surfaces using surface triplet propensities

W. Mehio, Graham Kemp, P. Taylor et al
Bioinformatics. Vol. 26 (20), p. 2549-2555
Journal article
2010

An automated framework for understanding structural variations in the binding grooves of MHC class II molecules

Kalidas Yeturu, Tapani Utriainen, Graham Kemp et al
BMC Bioinformatics. Vol. 11 (Suppl 1), p. S55-
Journal article
2009

An analytical solution for finding voids and bottlenecks within macromolecules

Fredrik Boulund, Viktor Jonsson, Erik Sterner et al
3DSig 2009: The 5th Structural Bioinformatics and Computational Biophysics Meeting, Stockholm, Sweden, 27-28 June 2009, p. 77-78
Conference poster
2009

Deriving binding site signatures in MHC Class II molecules, using a novel algorithm

Kalidas Yeturu, Graham Kemp, Nagasuma Chandra
17th Annual International Conference on Intelligent Systems for Molecular Biology & 8th European Conference on Computational Biology (ISMB/ECCB 2009), Stockholm, Sweden, 27 June to 2 July 2009
Conference poster
2009

Uniform Query Processing in a Federation of RDFS and Relational Resources

Merja Karjalainen, Graham Kemp
International Database Engineering and Applications Symposium (IDEAS'09), Proceedings, p. 315-320
Paper in proceedings
2009

STP: A Program to Predict Protein Binding Surfaces

Wissam Mehio, Graham Kemp, Paul Taylor et al
3DSig 2009: The 5th Structural Bioinformatics and Computational Biophysics Meeting, Stockholm, Sweden, 27-28 June 2009, p. 51-52
Conference poster
2009

Predicting functional upstream open reading frames in Saccharomyces cerevisiae

Selpi Selpi, Christopher H. Bryant, Graham Kemp et al
BMC Bioinformatics. Vol. 10, p. 451-
Journal article
2008

A Functional Data Model Approach to Querying RDF/RDFS Data

João Martins, Rui Nunes, Merja Karjalainen et al
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 5071, p. 153-164
Paper in proceedings
2008

An Ontology-Based Approach to Car Simulation and Design

Stuart Chalmers, Josef Nilsson, Håkan Edler et al
Third Asian Semantic Web Conference, ASWC2008 Bangkok, Thailand December 2008, Workshops Proceedings, p. 270-275
Paper in proceedings
2008

Using mRNA Secondary Structure Predictions Improves Recognition of Known Yeast Functional uORFs

Selpi Selpi, C. H. Bryant, Graham Kemp
Wehenkel, L., d'Alché-Buc, F., Moreau, Y. and Geurts, P. (eds.) MLSB08, The Second International Workshop on Machine Learning in Systems Biology, Brussels, 13-14 September 2008., p. 85-93
Paper in proceedings
2007

PROPHECY—a yeast phenome database, update 2006

Luciano Fernandez-Ricaud, Jonas Warringer, Elke Ericson et al
Nucleic Acids Research. Vol. 35 (SUPPL. 1), p. D463-D467
Journal article
2007

Using surface patch profiles to predict protein-protein binding surfaces

Wissam Mehio, Graham Kemp
3DSig: The 3rd Structural Bioinformatics and Computational Biophysics Meeting, Vienna, Austria, 19-20 July 2007, p. 43-44
Conference poster
2007

Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation

Marija Cvijovic, Daniel Dalevi, Elizabeth Bilsland et al
BMC Bioinformatics. Vol. 8, p. 295-
Journal article
2007

Using long fragments to reconstruct RNA backbones

Tapani Utriainen, Graham Kemp
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, p. 1424-1428
Paper in proceedings
2007

Using Inductive Logic Programming to Predict Functional Upstream Open Reading Frames in Yeast

Selpi Selpi, C. H. Bryant, Graham Kemp et al
15th Annual International Conference on Intelligent Systems for Molecular Biology & 6th European Conference on Computational Biology (ISMB/ECCB 2007), Vienna, Austria, 21-25 July 2007
Conference poster
2006

A First Step towards Learning which uORFs Regulate Gene Expression

Selpi Selpi, C. H. Bryant, Graham Kemp et al
Journal of integrative bioinformatics. Vol. 3 (2), p. 31-
Journal article
2006

Capturing Quantified Constraints in FOL, Through Interaction with a Relationship Graph

P. M. D. Gray, Graham Kemp
Managing Knowledge in a World of Networks: 15th International Conference, EKAW 2006, Lecture Notes in Computer Science. Vol. 4248, p. 19-26
Paper in proceedings
2005

Models of Database Interconnectivity

Graham Kemp
Database Annotation in Molecular Biology: Principles and Practice, p. 203-221
Book chapter
2005

PROPHECY - a database for high-resolution phenomics

Luciano Fernandez-Ricaud, Jonas Warringer, Elke Ericson et al
Nucleic Acids Research. Vol. 33 (DATABASE ISS.), p. D369-D373
Journal article
2005

The use of a genetic algorithm search for molecular mechanics (MM3)-based conformational analysis of oligosaccharides.

Per-Georg Nyholm, Avi Nahmany, F. Strino et al
Carbohydrate Research. Vol. 340 (5), p. 1059-1064
Journal article
2005

Predicting peptide interactions with model class II MHC structures

Martin T. Swain, Anthony J. Brooks, Graham Kemp
International Journal on Artificial Intelligence Tools. Vol. 14 (4), p. 561-575
Journal article
2005

Conformation of the exopolysaccharide of Burkholderia cepacia predicted with molecular mechanics (MM3) using genetic algorithm search.

F. Strino, Avi Nahmany, Jimmy Rosen et al
Carbohydrate Research. Vol. 340 (5), p. 1019-1024
Journal article
2005

Using the Functional Data Model to Store and Query Recursive Biological Data

Graham Kemp, Selpi Selpi, Merja Karjalainen
Workshop on Database Issues in Biological Databases (DBiBD),8-9 January 2005, Edinburgh, UK, p. 24-28
Conference contribution
2004

Optimisation Strategies for Functional Queries in a Distributed Environment

Graham Kemp, Peter M.D. Gray, Suzanne M. Embury
The Functional Approach to Data Management: Modeling, Analyzing and Integrating Heterogeneous Data, p. 189-210
Book chapter
2004

Pathway and Protein Interaction Data: from XML to FDM Database

Graham Kemp, Selpi Selpi
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 2994, p. 212-219
Journal article
2004

An Expressive Functional Data Model and Query Language for Bioinformatics Data Integration

Peter M.D. Gray, Graham Kemp
The Functional Approach to Data Management: Modeling, Analyzing and Integrating Heterogeneous Data, p. 166-188
Book chapter
2004

Analysis of Fish IL-1beta and Derived Peptide Sequences Indicates Conserved Structures with Species-Specific IL-1 Receptor Binding: Implications for Pharmacological Design

Antonis I. Koussounadis, David W. Ritchie, Graham Kemp et al
Current Pharmaceutical Design. Vol. 10 (31), p. 3857-3871
Journal article
2003

P/FDM Mediator for a Bioinformatics Database Federation

Graham Kemp, Peter M.D. Gray
Bioinformatics: Managing Scientific Data, p. 249-275
Book chapter
2002

Modelling Biological Data in Hierarchies

Graham Kemp, Peter M. D. Gray
10th International Conference on Intelligent Systems for Molecular Biology, Edmonton, Canada, 3-7 August 2002
Conference contribution
2002

Architecture of a mediator for a bioinformatics database federation

Graham Kemp, Nicos Angelopoulos, Peter M.D. Gray
IEEE Transactions on Information Technology in Biomedicine. Vol. 6 (2), p. 116-122
Journal article

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