Graham Kemp

Computational protein modelling based on limited sets of constraints

Computation of Binding Energies Including Their Enthalpy and Entropy Components for Protein-Ligand Complexes Using Support Vector Machines

Standardizing radiation oncology data for future modelling of side effects after radiation therapy

Identification of protein binding surfaces using surface triplet propensities

Data Integration in the Life Sciences 7th International Conference, DILS 2010, Gothenburg, Sweden, August 25-27, 2010. Proceedings

2010

An automated framework for understanding structural variations in the binding grooves of MHC class II molecules

An analytical solution for finding voids and bottlenecks within macromolecules

Deriving binding site signatures in MHC Class II molecules, using a novel algorithm

Uniform Query Processing in a Federation of RDFS and Relational Resources

STP: A Program to Predict Protein Binding Surfaces

2009

Predicting functional upstream open reading frames in Saccharomyces cerevisiae

A Functional Data Model Approach to Querying RDF/RDFS Data

An Ontology-Based Approach to Car Simulation and Design

Using mRNA Secondary Structure Predictions Improves Recognition of Known Yeast Functional uORFs

PROPHECY—a yeast phenome database, update 2006

Using surface patch profiles to predict protein-protein binding surfaces

Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation

Using long fragments to reconstruct RNA backbones

Using Inductive Logic Programming to Predict Functional Upstream Open Reading Frames in Yeast

A First Step towards Learning which uORFs Regulate Gene Expression

Capturing Quantified Constraints in FOL, Through Interaction with a Relationship Graph

Models of Database Interconnectivity

PROPHECY - a database for high-resolution phenomics

The use of a genetic algorithm search for molecular mechanics (MM3)-based conformational analysis of oligosaccharides.

Predicting peptide interactions with model class II MHC structures

Conformation of the exopolysaccharide of Burkholderia cepacia predicted with molecular mechanics (MM3) using genetic algorithm search.

Using the Functional Data Model to Store and Query Recursive Biological Data

Optimisation Strategies for Functional Queries in a Distributed Environment

Pathway and Protein Interaction Data: from XML to FDM Database

An Expressive Functional Data Model and Query Language for Bioinformatics Data Integration

Analysis of Fish IL-1beta and Derived Peptide Sequences Indicates Conserved Structures with Species-Specific IL-1 Receptor Binding: Implications for Pharmacological Design

P/FDM Mediator for a Bioinformatics Database Federation

Modelling Biological Data in Hierarchies

Architecture of a mediator for a bioinformatics database federation