Rocio Mercado

Assistant Professor at Data Science and AI

Source: chalmers.se
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Showing 12 publications

2025

Prediction of Permeability and Efflux Using Multitask Learning

Philip Ivers Ohlsson, Gian Marco Ghiandoni, Susanne Winiwarter et al
ACS Omega. Vol. 10 (45), p. 54148-54159
Journal article
2025

Predicting PROTAC-mediated ternary complexes with AlphaFold3 and Boltz-1

Nils Dunlop, Francisco Erazo, Farzaneh Jalalypour et al
Digital Discovery
Journal article
2025

LAGOM: A transformer-based chemical language model for drug metabolite prediction

Sofia Larsson, Miranda Carlsson, Richard Beckmann et al
Artificial Intelligence in the Life Sciences. Vol. 8
Journal article
2025

Retrosynformer: planning multi-step chemical synthesis routes via a decision transformer

Emma Granqvist, Rocio Mercado, Samuel Genheden
Digital Discovery. Vol. In Press
Journal article
2024

Do Chemformers Dream of Organic Matter? Evaluating a Transformer Model for Multistep Retrosynthesis

Annie M. Westerlund, Siva Manohar Koki, Supriya Kancharla et al
Journal of Chemical Information and Modeling. Vol. 64 (8), p. 3021-3033
Journal article
2024

Modeling PROTAC degradation activity with machine learning

Stefano Ribes, Eva Nittinger, Christian Tyrchan et al
Artificial Intelligence in the Life Sciences. Vol. 6
Journal article
2024

A comprehensive review of emerging approaches in machine learning for de novo PROTAC design

Yossra Gharbi, Rocio Mercado
Digital Discovery. Vol. 3 (11), p. 2158-2176
Review article
2023

Data Sharing in Chemistry: Lessons Learned and a Case for Mandating Structured Reaction Data

Rocio Mercado, Steven M. Kearnes, Connor W. Coley
Journal of Chemical Information and Modeling. Vol. 63 (14), p. 4253-4265
Review article
2022

De Novo Drug Design Using Reinforcement Learning with Graph- Based Deep Generative Models

Sara Romeo Atance, Juan Viguera Diez, Ola Engkvist et al
Journal of Chemical Information and Modeling. Vol. 62 (20), p. 4863-4872
Journal article
2022

Exploring Graph Traversal Algorithms in Graph-Based Molecular Generation

Rocio Mercado, Esben Jannik Bjerrum, Ola Engkvist
Journal of Chemical Information and Modeling. Vol. 62 (9), p. 2093-2100
Journal article
2021

Graph networks for molecular design

Rocio Mercado, Tobias Rastemo, Edvard Lindelöf et al
Machine Learning: Science and Technology. Vol. 2 (2)
Journal article
2020

Practical notes on building molecular graph generative models

Rocio Mercado, Tobias Rastemo, Edvard Lindelof et al
Applied AI Letters. Vol. 1 (2)
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Showing 6 research projects

2026–2030

New Paradigms for Deep Generative Modeling of Polymers (POLYGEN)

Rocio Mercado Data Science and AI
European Research Council (ERC)

2025–2030

NEST project Solid Polymer ElectrolytE Discovery (SPEED)

Rocio Mercado Data Science and AI
Knut and Alice Wallenberg Foundation

2025–2030

Time-Resolved Imaging and Multi-Channel Evaluation of Cellular Dynamics (TIMED)

Rocio Mercado Data Science and AI
Ashkan Panahi Data Science and AI 3
Knut and Alice Wallenberg Foundation

2025–2026

Language models for accelerated materials design of multi-component oxides

Rocio Mercado Data Science and AI
Knut and Alice Wallenberg Foundation

2024–2027

Modeling cellular uptake via the IFITM pathway for data-driven drug design

Rocio Mercado Data Science and AI
Swedish Research Council (VR)

2024–2026

An integrated molecular dynamics and deep learning framework for multi-modal materials data

Rocio Mercado Data Science and AI
Merck KGaA
Intel Corporation

There might be more projects where Rocio Mercado participates, but you have to be logged in as a Chalmers employee to see them.