Kaisa Thorell

Showing 16 publications


Circulation of enterotoxigenic Escherichia coli (ETEC) isolates expressing CS23 from the environment to clinical settings

Carla Calderon Toledo, Astrid von Mentzer, Jorge Agramont et al
mSystems. Vol. 8 (5)
Journal article

Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker

Johan Bengtsson-Palme, Rodney T. Richardson, Marco Meola et al
Bioinformatics. Vol. 34 (23), p. 4027-4033
Journal article

Draft Genome Sequences of Six Strains of Streptococcus pneumoniae from Serotypes 5, 6A, 6B, 18C, 19A, and 23F

Hedvig E. Jakobsson, Francisco Salvà-Serra, Kaisa Thorell et al
Genome Announcements. Vol. 5 (14)
Journal article

In vivo analysis of the viable microbiota and Helicobacter pylori transcriptome in gastric infection and early stages of carcinogenesis

Kaisa Thorell, Johan Bengtsson-Palme, Oscar Hsin Fu Liu et al
Infection and Immunity. Vol. 85 (10)
Journal article

Draft Genome Sequence of Moraxella catarrhalis Type Strain CCUG 353T.

Hedvig E Jakobsson, Francisco Salvà-Serra, Kaisa Thorell et al
Genome Announcements. Vol. 4 (3)
Journal article

Metaxa2 Diversity Tools: Easing microbial community analysis with Metaxa2

Johan Bengtsson-Palme, Kaisa Thorell, Christian Wurzbacher et al
Ecological Informatics. Vol. 33, p. 45-50
Journal article

Strategies to improve usability and preserve accuracy in biological sequence databases

Johan Bengtsson-Palme, Fredrik Boulund, Robert Edström et al
Proteomics. Vol. 16 (18), p. 2454-2460
Journal article

Comparative Analysis of Two Helicobacter pylori Strains using Genomics and Mass Spectrometry-Based Proteomics

R. Karlsson, Kaisa Thorell, Seyedeh Shaghayegh Hosseini et al
Frontiers in Microbiology. Vol. 7 (NOV), p. art. no. 1757 -
Journal article

Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua

Kaisa Thorell, Seyed Vali Hesseini, Rvpp Gonzales et al
BMC Evolutionary Biology. Vol. 16 (1), p. art no 53-
Journal article

Draft Genome Sequence of Streptococcus gordonii Type Strain CCUG 33482T.

Francisco Salvà-Serra, Hedvig E Jakobsson, Kaisa Thorell et al
Genome Announcements. Vol. 4 (2)
Journal article

Metaxa2: Improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data

Johan Bengtsson-Palme, Martin Hartmann, Martin Eriksson et al
Molecular Ecology Resources. Vol. 15 (6), p. 1403-1414
Journal article

Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker

Intawat Nookaew, Kaisa Thorell, Kuntal Worah et al
BMC Medical Genomics. Vol. 6 (41)
Journal article

Evolution of the human gastrokine locus and confounding factors regarding the pseudogenicity of GKN3

J. H. Geahlen, C. Lapid, Kaisa Thorell et al
Physiological Genomics. Vol. 45 (15), p. 667-683
Journal article

Bicarbonate and functional CFTR channel are required for proper mucin secretion and link cystic fibrosis with its mucus phenotype.

Jenny K Gustafsson, Anna Ermund, Daniel Ambort et al
The Journal of experimental medicine. Vol. 209 (7), p. 1263-72
Journal article

Verification of genes differentially expressed in neuroblastoma tumours: a study of potential tumour suppressor genes.

Kaisa Thorell, Annika Bergman, Helena Carén et al
BMC Medical Genomics. Vol. 2 (1), p. 53-
Journal article

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