Fast, accurate and lightweight sequential simulation-based inference using Gaussian locally linear mappings
Journal article, 2024

Bayesian inference for complex models with an intractable likelihood can be tackled using algorithms performing many calls to computer simulators. These approaches are collectively known as "simulation-based inference" (SBI). Recent SBI methods have made use of neural networks (NN) to provide approximate, yet expressive constructs for the unavailable likelihood function and the posterior distribution. However, the trade-off between accuracy and computational demand leaves much space for improvement. In this work, we propose an alternative that provides both approximations to the likelihood and the posterior distribution, using structured mixtures of probability distributions. Our approach produces accurate posterior inference when compared to state-of-the-art NN-based SBI methods, even for multimodal posteriors, while exhibiting a much smaller computational footprint. We illustrate our results on several benchmark models from the SBI literature and on a biological model of the translation kinetics after mRNA transfection.

mixture models

simulation-based inference

SBI

Bayesian inference

likelihood-free

Author

Henrik Häggström

Chalmers, Mathematical Sciences, Applied Mathematics and Statistics

Pedro Rodrigues

Institut National de Recherche en Informatique et en Automatique (INRIA)

Geoffroy Oudoumanessah

Institut National de Recherche en Informatique et en Automatique (INRIA)

Florence Forbes

Institut National de Recherche en Informatique et en Automatique (INRIA)

Umberto Picchini

Chalmers, Mathematical Sciences, Applied Mathematics and Statistics

Transactions on Machine Learning Research

2835-8856 (ISSN)

Statistical Inference and Stochastic Modelling of Protein Folding

Swedish Research Council (VR) (2013-5167), 2014-01-01 -- 2019-12-31.

Deep learning and likelihood-free Bayesian inference for stochastic modelling

Chalmers AI Research Centre (CHAIR), 2020-01-01 -- 2024-12-31.

Swedish Research Council (VR) (2019-03924), 2020-01-01 -- 2023-12-31.

Subject Categories

Computational Mathematics

Probability Theory and Statistics

Computer Science

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Latest update

7/9/2024 2