Solid-State Nanopore Sensors: Analyte Quantification by Event Frequency Analysis at High Voltages

Journal article, 2025

Solid state nanopores have emerged as an important electrical label-free single-molecule detection platform. While much effort has been spent on analyzing the current trace to determine size, shape and charge of the translocating species, a less studied aspect is the number of events and how this relates to analyte concentration. In this work we systematically investigate how the event frequency depends on voltage applied across the pore and show that this dependence can be utilized to determine target concentration. Importantly, this method does not require any calibration or any additional species added to the solution. Data analysis algorithms are introduced to accurately count events also for high voltages (up to 1 V). For double stranded DNA as model analyte, we find a linear relation between event frequency and voltage for pores 10 nm or more in diameter. For smaller pores, the majority of events are dockings rather than translocations and the linear relation is lost, in agreement with theory. Our model also predicts that the electrophoretic mobility of the species will influence event frequency, while diffusivity does not, which we confirm by using two different sizes of DNA. The analyte concentration determination is found to be remarkably accurate (10% error) when taking the average of multiple (∼4) experiments. If based on a single experiment, the predictive power is lower, but the method still provides a useful estimate (<30% error). This study should be useful as a guide when performing experiments at higher voltages and may serve as a method to extract analyte concentration in bioanalytical applications of nanopore sensors.