The 2008 update of the Aspergillus nidulans genome annotation: A community effort

J. R. Wortman; J. M. Gilsenan; V. Joardar; J. Deegan; J. Clutterbuck; M. R. Andersen; D. Archer; M. Bencina; G. Braus; P. Coutinho; H. von Dohren; J. Doonan; A. J. M. Driessen; P. Durek; E. Espeso; E. Fekete; M. Flipphi; C. G. Estrada; S. Geysens; G. Goldman; P. W. J. de Groot; K. Hansen; S. D. Harris; T. Heinekamp; K. Helmstaedt; B. Henrissat; G. Hofmann; T. Homan; T. Horio; H. Horiuchi; S. James; M. Jones; L. Karaffa; Z. Karanyi; M. Kato; N. Keller; D. E. Kelly; Jakw Kiel; J. M. Kim; I. J. van der Klei; F. M. Klis; A. Kovalchuk; N. Krasevec; C. P. Kubicek; B. Liu; A. MacCabe; V. Meyer; P. Mirabito; M. Miskei; M. Mos; J. Mullins; D. R. Nelson; Jens B Nielsen; B. R. Oakley; S. A. Osmani; T. Pakula; A. Paszewski; I. Paulsen; S. Pilsyk; I. Pocsi; P. J. Punt; A. F. J. Ram; Q. H. Ren; X. Robellet; G. Robson; B. Seiboth; P. van Solingen; T. Specht; J. B. Sun; N. Taheri-Talesh; N. Takeshita; D. Ussery; P. A. vanKuyk; H. Visser; Pjiv de Vondervoort; R. P. de Vries; J. Walton; X. Xiang; Y. Xiong; A. P. Zeng; B. W. Brandt; M. J. Cornell; Camjj van den Hondel; J. Visser; S. G. Oliver; G. Turner

doi:10.1016/j.fgb.2008.12.003

The 2008 update of the Aspergillus nidulans genome annotation: A community effort
Journal article, 2009

The identification and annotation of protein-coding genes is one of the primary goals of whole-genome sequencing projects, and the accuracy of predicting the primary protein products of gene expression is vital to the interpretation of the available data and the design of downstream functional applications. Nevertheless, the comprehensive annotation of eukaryotic genomes remains a considerable challenge. Many genomes submitted to public databases, including those of major model organisms, contain significant numbers of wrong and incomplete gene predictions. We present a community-based reannotation of the Aspergillus nidulans genome with the primary goal of increasing the number and quality of protein functional assignments through the careful review of experts in the field of fungal biology. (C) 2009 Elsevier Inc. All rights reserved.

Annotation

cell-wall

CADRE

a-fumigatus

identification

Transcription factors

transcriptional activator

dna

Fungal community

niger

Genome

sequence

prediction

Aspergilli

gene-cluster

Aspergillus nidulans

biosynthesis

Assembly

Author

J. R. Wortman

J. M. Gilsenan

V. Joardar

J. Deegan

J. Clutterbuck

M. R. Andersen

D. Archer

M. Bencina

G. Braus

P. Coutinho

H. von Dohren

J. Doonan

A. J. M. Driessen

P. Durek

E. Espeso

E. Fekete

M. Flipphi

C. G. Estrada

S. Geysens

G. Goldman

P. W. J. de Groot

K. Hansen

S. D. Harris

T. Heinekamp

K. Helmstaedt

B. Henrissat

G. Hofmann

T. Homan

T. Horio

H. Horiuchi

S. James

M. Jones

L. Karaffa

Z. Karanyi

M. Kato

N. Keller

D. E. Kelly

Jakw Kiel

J. M. Kim

I. J. van der Klei

F. M. Klis

A. Kovalchuk

N. Krasevec

C. P. Kubicek

B. Liu

A. MacCabe

V. Meyer

P. Mirabito

M. Miskei

M. Mos

J. Mullins

D. R. Nelson

Jens B Nielsen

Chalmers, Chemical and Biological Engineering, Life Sciences

Other publications Research

B. R. Oakley

S. A. Osmani

T. Pakula

A. Paszewski

I. Paulsen

S. Pilsyk

I. Pocsi

P. J. Punt

A. F. J. Ram

Q. H. Ren

X. Robellet

G. Robson

B. Seiboth

P. van Solingen

T. Specht

J. B. Sun

N. Taheri-Talesh

N. Takeshita

D. Ussery

P. A. vanKuyk

H. Visser

Pjiv de Vondervoort

R. P. de Vries

J. Walton

X. Xiang

Y. Xiong

A. P. Zeng

B. W. Brandt

M. J. Cornell

Camjj van den Hondel

J. Visser

S. G. Oliver

G. Turner

Fungal Genetics and Biology

1087-1845 (ISSN) 1096-0937 (eISSN)

Vol. 46 S2-S13

Subject Categories

Dermatology and Venereal Diseases

Areas of Advance

Life Science Engineering (2010-2018)

DOI

10.1016/j.fgb.2008.12.003

Publication data connected to DOI

More information

Created

10/7/2017

The 2008 update of the Aspergillus nidulans genome annotation: A community effort Journal article, 2009