Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae
Artikel i vetenskaplig tidskrift, 2009

The plant polysaccharide degradative potential of Aspergillus nidulans was analysed in detail and compared to that of Aspergillus niger and Aspergillus oryzae using a combination of bioinformatics, physiology and transcriptomics. Manual verification indicated that 28.4% of the A. nidulans ORFs analysed in this study do not contain a secretion signal, of which 40% may be secreted through a non-classical method. While significant differences were found between the species in the numbers of ORFs assigned to the relevant CAZy families, no significant difference was observed in growth on polysaccharides. Growth differences were observed between the Aspergilli and Podospora anserina, which has a more different genomic potential for polysaccharide degradation, suggesting that large genomic differences are required to cause growth differences oil polysaccharides, Differences were also detected between the Aspergilli in the presence Of putative regulatory sequences in the promoters of the ORFs Of this Study and correlation of the presence Of putative XlnR binding sites to induction by xylose was detected for A. niger. These data demonstrate differences at genome content, Substrate specificity of the enzymes and gene regulation in these three Aspergilli, which likely reflect their individual adaptation to their natural biotope. (C) 2008 Elsevier Inc. All rights reserved.

carbon catabolite repression

identification

Promoter analysis

Substrate specificity

CAZy

enzymes

trichoderma-reesei

transcriptional activator xlnr

Micro array analysis

XlnR

degrading

cell-walls

beta-mannanases

expression

Plant polysaccharide degradation

Aspergillus

endoglucanase

genes

Författare

P. M. Coutinho

M. R. Andersen

K. Kolenova

P. A. vanKuyk

I. Benoit

B. S. Gruben

B. Trejo-Aguilar

H. Visser

P. van Solingen

T. Pakula

B. Seiboth

E. Battaglia

G. Aguilar-Osorio

J. F. de Jong

R. A. Ohm

M. Aguilar

B. Henrissat

Jens B Nielsen

Chalmers, Kemi- och bioteknik, Livsvetenskaper, Systembiologi

H. Stalbrand

R. P. de Vries

Fungal Genetics and Biology

1087-1845 (ISSN) 1096-0937 (eISSN)

Vol. 46 Suppl 1 S161-S169

Ämneskategorier

Industriell bioteknik

Styrkeområden

Livsvetenskaper och teknik

DOI

10.1016/j.fgb.2008.07.020