Empirical Model for Phycocyanin Concentration Estimation as an Indicator of Cyanobacterial Bloom in the Optically Complex Coastal Waters of the Baltic Sea
Artikel i vetenskaplig tidskrift, 2016

Commonly used parameters to assess cyanobacteria blooms are chlorophyll a concentration and cyanobacterial cell counts. Chlorophyll a is contained in all phytoplankton groups and therefore it is not a good estimator when only detection of cyanobacteria is desired. Moreover, laboratory determination of cyanobacterial cell counts is difficult and it requires awell-trained specialist. Instead of that, cyanobacterial blooms can be assessed using phycocyanin, a marker pigment for cyanobacteria, which shows a strong correlation with the biomass of cyanobacteria. The objective of this research is to develop a simple, remote sensing reflectance-based spectral band ratio model for the estimation of phycocyanin concentration, optimized for the waters of the Baltic Sea. The study was performed using hyperspectral remote sensing reflectance data and reference pigment concentration obtained in the optically complex coastal waters of the Baltic Sea, where cyanobacteria bloom occur regularly every summer, often causing severe damages. The presented two-band model shows good estimation results, with root-mean-square error (RMSE) 0.26 and determination coefficient (R-2) 0.73. Moreover, no correlation with chlorophyll a concentration is observed, which makes it accurate in predicting cyanobacterial abundance in the presence of other chlorophyll-containing phytoplankton groups as well as for the waters with high colored dissolved organic matter (CDOM) concentration. The developed model was also adapted to spectral bands of the recently launched Sentinel-3 Ocean and Land Color Imager (OLCI) radiometer, and the estimation accuracy was comparable (RMSE = 0.28 and R-2 = 0.69). The presented model allows frequent, large-scale monitoring of cyanobacteria biomass and it can be an effective tool for the monitoring and management of coastal regions.



Baltic Sea

band ratio

hyperspectral remote sensing reflectance




Monika Wozniak

Chalmers, Rymd- och geovetenskap, Radarfjärranalys

K. M. Bradtke

Uniwersytet Gdański

M. Darecki

Institute of Oceanology of the Polish Academy of Sciences

A. Krezel

Uniwersytet Gdański

Remote Sensing

2072-4292 (ISSN)

Vol. 8 212