Three novel approaches to structural identifiability analysis in mixed-effects models
Artikel i vetenskaplig tidskrift, 2019

Background and objective: Structural identifiability is a concept that considers whether the structure of a model together with a set of input-output relations uniquely determines the model parameters. In the mathematical modelling of biological systems, structural identifiability is an important concept since biological interpretations are typically made from the parameter estimates. For a system defined by ordinary differential equations, several methods have been developed to analyse whether the model is structurally identifiable or otherwise. Another well-used modelling framework, which is particularly useful when the experimental data are sparsely sampled and the population variance is of interest, is mixed-effects modelling. However, established identifiability analysis techniques for ordinary differential equations are not directly applicable to such models. Methods: In this paper, we present and apply three different methods that can be used to study structural identifiability in mixed-effects models. The first method, called the repeated measurement approach, is based on applying a set of previously established statistical theorems. The second method, called the augmented system approach, is based on augmenting the mixed-effects model to an extended state-space form. The third method, called the Laplace transform mixed-effects extension, is based on considering the moment invariants of the systems transfer function as functions of random variables. Results: To illustrate, compare and contrast the application of the three methods, they are applied to a set of mixed-effects models. Conclusions: Three structural identifiability analysis methods applicable to mixed-effects models have been presented in this paper. As method development of structural identifiability techniques for mixed-effects models has been given very little attention, despite mixed-effects models being widely used, the methods presented in this paper provides a way of handling structural identifiability in mixed-effects models previously not possible. (C) 2016 Elsevier Ireland Ltd. All rights reserved.

Random differential equation

Laplace transform

Structural identifiability

Mixed-effects modelling

Författare

David L. I. Janzen

The University of Warwick

AstraZeneca

Stiftelsen Fraunhofer-Chalmers Centrum för Industrimatematik

Mats Jirstrand

Stiftelsen Fraunhofer-Chalmers Centrum för Industrimatematik

Michael J. Chappell

The University of Warwick

Neil D. Evans

The University of Warwick

Computer Methods and Programs in Biomedicine

0169-2607 (ISSN)

Vol. 171 141-152

Ämneskategorier

Bioinformatik (beräkningsbiologi)

Sannolikhetsteori och statistik

Reglerteknik

DOI

10.1016/j.cmpb.2016.04.024

PubMed

27181677

Mer information

Senast uppdaterat

2019-08-20