Enabling large-scale genome editing at repetitive elements by reducing DNA nicking
Artikel i vetenskaplig tidskrift, 2020
To extend the frontier of genome editing and enable editing of repetitive elements of mammalian genomes, we made use of a set of dead-Cas9 base editor (dBE) variants that allow editing at tens of thousands of loci per cell by overcoming the cell death associated with DNA double-strand breaks and single-strand breaks. We used a set of gRNAs targeting repetitive elements-ranging in target copy number from about 32 to 161 000 per cell. dBEs enabled survival after large-scale base editing, allowing targeted mutations at up to ∼13 200 and ∼12 200 loci in 293T and human induced pluripotent stem cells (hiPSCs), respectively, three orders of magnitude greater than previously recorded. These dBEs can overcome current on-target mutation and toxicity barriers that prevent cell survival after large-scale genome engineering.
Författare
Cory J. Smith
Harvard University
Harvard Medical School
Oscar Castanon
Harvard Medical School
Harvard University
École polytechnique
Khaled Said
Harvard University
Harvard Medical School
Verena Volf
Harvard University
Harvard Medical School
Parastoo Khoshakhlagh
Harvard University
Harvard Medical School
Amanda Hornick
Harvard Medical School
Harvard University
Raphael Ferreira
Chalmers, Biologi och bioteknik, Systembiologi
Chun Ting Wu
Harvard Medical School
Harvard University
Marc Güell
Universitat Pompeu Fabra
Shilpa Garg
Harvard Medical School
Alex H.M. Ng
Harvard University
Harvard Medical School
Hannu Myllykallio
École polytechnique
George M. Church
Harvard University
Harvard Medical School
Nucleic Acids Research
0305-1048 (ISSN) 1362-4962 (eISSN)
Vol. 48 9 5183-5195Ämneskategorier (SSIF 2011)
Cellbiologi
Cell- och molekylärbiologi
Medicinsk bioteknologi (med inriktning mot cellbiologi (inklusive stamcellsbiologi), molekylärbiologi, mikrobiologi, biokemi eller biofarmaci)
DOI
10.1093/nar/gkaa239
PubMed
32315033