Rasmus Ågren

Forskare at CSBI

Rasmus is a researcher in Chalmers Systems Biology infrastructure.

Source: chalmers.se

Showing 19 publications

2019

ATAC-seq reveals alterations in open chromatin in pancreatic islets from subjects with type 2 diabetes

Madhusudhan Bysani, Rasmus Ågren, Cajsa Davegardh et al
Scientific Reports. Vol. 9 (1)
Journal article
2018

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

Hao Wang, Simonas Marcisauskas, Benjamin José Sanchez Barja et al
PLoS Computational Biology. Vol. 14 (10), p. e1006541-
Journal article
2018

Metabolome dynamics of diapause in the butterfly Pieris napi: Distinguishing maintenance, termination and post-diapause phases

Philipp Lehmann, Peter Pruisscher, Vladimir Kostal et al
Journal of Experimental Biology. Vol. 221 (2)
Journal article
2018

Bioconda: Sustainable and comprehensive software distribution for the life sciences

Ryan Dale, Björn Grüning, Andreas Sjödin et al
Nature Methods. Vol. 15 (7), p. 475-476
Journal article
2018

Archaeal community changes in Lateglacial lake sediments: Evidence from ancient DNA

Engy Ahmed, Laura Parducci, Per Unneberg et al
Quaternary Science Reviews. Vol. 181, p. 19-29
Journal article
2015

Metabolic Needs and Capabilities of Toxoplasma gondii through Combined Computational and Experimental Analysis

S. Tymoshenko, R.D. Oppenheim, Rasmus Ågren et al
PLoS Computational Biology. Vol. 11 (5), p. Art. no. e1004261-
Journal article
2014

Identification of anticancer drugs for hepatocellular carcinoma through personalized genome-scale metabolic modeling

Rasmus Ågren, Adil Mardinoglu, A. Asplund et al
Molecular Systems Biology. Vol. 10 (3)
Journal article
2014

Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease

Adil Mardinoglu, Rasmus Ågren, C. Kampf et al
Nature Communications. Vol. 5, p. 11-
Journal article
2013

Genome-scale modeling enables metabolic engineering of Saccharomyces cerevisiae for succinic acid production

Rasmus Ågren, José Manuel Otero, Jens B Nielsen
Journal of Industrial Microbiology and Biotechnology. Vol. 40 (7), p. 735-747
Journal article
2013

Integration of clinical data with a genome-scale metabolic model of the human adipocyte

Adil Mardinoglu, Rasmus Ågren, C. Kampf et al
Molecular Systems Biology. Vol. 9 (1), p. 649-
Journal article
2013

On metabolic networks and multi-omics integration

Rasmus Ågren
Doctoral thesis
2013

A community-driven global reconstruction of human metabolism

I. Thiele, N. Swainston, R. M. T. Fleming et al
Nature Biotechnology. Vol. 31 (5), p. 419-+
Journal article
2013

The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum

Rasmus Ågren, Liming Liu, Saeed Shoaie et al
PLoS Computational Biology. Vol. 9 (3), p. e1002980-
Journal article
2012

Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT

Rasmus Ågren, Sergio Velasco, Adil Mardinoglu et al
PLoS Computational Biology (5)
Journal article
2012

Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in-silico evaluation of their potentials

Luis Caspeta-Guadarrama, Saeed Shoaie, Rasmus Ågren et al
BMC Systems Biology. Vol. 6 (24)
Journal article
2011

MEMOSys: Bioinformatics platform for genome-scale metabolic models

S. Pabinger, R. Rader, Rasmus Ågren et al
BMC Systems Biology. Vol. 5
Journal article
2010

Sampling the Solution Space in Genome-Scale Metabolic Networks Reveals Transcriptional Regulation in Key Enzymes

Sergio Velasco, Rasmus Ågren, Jens B Nielsen
PLoS Computational Biology. Vol. 6 (7), p. 16-
Journal article
2010

BioMet Toolbox: genome-wide analysis of metabolism

Marija Cvijovic, Roberto Olivares Hernandez, Rasmus Ågren et al
Nucleic Acids Research. Vol. 38 (SUPPL. 2), p. W144-W149
Journal article
2010

Use of genome-scale metabolic models for understanding microbial physiology

Liming Liu, Rasmus Ågren, Sergio Velasco et al
FEBS Letters. Vol. 584 (12), p. 2556-2564
Journal article

Save references

If you have installed Zotero or Mendeley on your computer you can use a plugin to extract references from the publications you see.

Download plugins:
Zotero
Mendeley

There are no projects.
There might be more projects where Rasmus Ågren participates, but you have to be logged in as a Chalmers employee to see them.