Rasmus Ågren

Forskare at Systems and Synthetic Biology

Contact Details ORCID

Publications (20)
Projects (0)

Showing 20 publications

2021

In vivo screen identifies a SIK inhibitor that induces beta cell proliferation through a transient UPR

Jeremie Charbord, Lipeng Ren, Rohit B. Sharma et al

Nature Metabolism. Vol. 3 (5), p. 682-700

Journal article

2019

ATAC-seq reveals alterations in open chromatin in pancreatic islets from subjects with type 2 diabetes

Madhusudhan Bysani, Rasmus Ågren, Cajsa Davegardh et al

Scientific Reports. Vol. 9 (1)

Journal article

2018

Metabolome dynamics of diapause in the butterfly Pieris napi: Distinguishing maintenance, termination and post-diapause phases

Philipp Lehmann, Peter Pruisscher, Vladimir Kostal et al

Journal of Experimental Biology. Vol. 221 (2)

Journal article

2018

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

Hao Wang, Simonas Marcisauskas, Benjamin José Sanchez Barja et al

PLoS Computational Biology. Vol. 14 (10), p. e1006541-

Journal article

2018

Bioconda: Sustainable and comprehensive software distribution for the life sciences

Ryan Dale, Björn Grüning, Andreas Sjödin et al

Nature Methods. Vol. 15 (7), p. 475-476

Journal article

2018

Archaeal community changes in Lateglacial lake sediments: Evidence from ancient DNA

Engy Ahmed, Laura Parducci, Per Unneberg et al

Quaternary Science Reviews. Vol. 181, p. 19-29

Journal article

2015

Metabolic Needs and Capabilities of Toxoplasma gondii through Combined Computational and Experimental Analysis

S. Tymoshenko, R.D. Oppenheim, Rasmus Ågren et al

PLoS Computational Biology. Vol. 11 (5), p. Art. no. e1004261-

Journal article

2014

Identification of anticancer drugs for hepatocellular carcinoma through personalized genome-scale metabolic modeling

Rasmus Ågren, Adil Mardinoglu, A. Asplund et al

Molecular Systems Biology. Vol. 10 (3)

Journal article

2014

Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease

Adil Mardinoglu, Rasmus Ågren, C. Kampf et al

Nature Communications. Vol. 5, p. 11-

Journal article

2013

On metabolic networks and multi-omics integration

Rasmus Ågren

Doctoral thesis

2013

The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum

Rasmus Ågren, Liming Liu, Saeed Shoaie et al

PLoS Computational Biology. Vol. 9 (3), p. e1002980-

Journal article

Show project

2013

Genome-scale modeling enables metabolic engineering of Saccharomyces cerevisiae for succinic acid production

Rasmus Ågren, José Manuel Otero, Jens B Nielsen

Journal of Industrial Microbiology and Biotechnology. Vol. 40 (7), p. 735-747

Journal article

2013

A community-driven global reconstruction of human metabolism

I. Thiele, N. Swainston, R. M. T. Fleming et al

Nature Biotechnology. Vol. 31 (5), p. 419-+

Journal article

2013

Integration of clinical data with a genome-scale metabolic model of the human adipocyte

Adil Mardinoglu, Rasmus Ågren, C. Kampf et al

Molecular Systems Biology. Vol. 9 (1), p. 649-

Journal article

2012

Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT

Rasmus Ågren, Sergio Velasco, Adil Mardinoglu et al

PLoS Computational Biology. Vol. 8 (5)

Journal article

2012

Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in-silico evaluation of their potentials

Luis Caspeta-Guadarrama, Saeed Shoaie, Rasmus Ågren et al

BMC Systems Biology. Vol. 6 (24)

Journal article

2011

MEMOSys: Bioinformatics platform for genome-scale metabolic models

S. Pabinger, R. Rader, Rasmus Ågren et al

BMC Systems Biology. Vol. 5

Journal article

2010

BioMet Toolbox: genome-wide analysis of metabolism

Marija Cvijovic, Roberto Olivares Hernandez, Rasmus Ågren et al

Nucleic Acids Research. Vol. 38 (SUPPL. 2), p. W144-W149

Journal article

2010

Sampling the Solution Space in Genome-Scale Metabolic Networks Reveals Transcriptional Regulation in Key Enzymes

Sergio Velasco, Rasmus Ågren, Jens B Nielsen

PLoS Computational Biology. Vol. 6 (7), p. 16-16

Journal article

2010

Use of genome-scale metabolic models for understanding microbial physiology

Liming Liu, Rasmus Ågren, Sergio Velasco et al

FEBS Letters. Vol. 584 (12), p. 2556-2564

Journal article

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