Le Yuan

Showing 11 publications

2024

A unique metabolic gene cluster regulates lactose and galactose metabolism in the yeast Candida intermedia

Kameshwara Venkata Ramana Peri, Le Yuan, Fábio Luis Da Silva Faria Oliveira et al
Applied and Environmental Microbiology. Vol. 90 (10)
Journal article
2024

Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0

Yu Chen, Johan Gustafsson, Albert Tafur Rangel et al
Nature Protocols. Vol. 19 (3), p. 629-667
Journal article
2023

Regulation of lactose and galactose growth: Insights from a unique metabolic gene cluster in Candida intermedia

Kameshwara Venkata Ramana Peri, Le Yuan, Fábio Luis Da Silva Faria Oliveira et al
Preprint
2023

HGTphyloDetect: facilitating the identification and phylogenetic analysis of horizontal gene transfer

Le Yuan, Hongzhong Lu, Feiran Li et al
Briefings in Bioinformatics. Vol. 24 (2)
Journal article
2022

Deep learning-based k(cat) prediction enables improved enzyme-constrained model reconstruction

Feiran Li, Le Yuan, Hongzhong Lu et al
Nature Catalysis. Vol. 5 (8), p. 662-672
Journal article
2022

Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints

Feiran Li, Yu Chen, Qi Qi et al
Nature Communications. Vol. 13 (1)
Journal article
2021

ChemHub: a knowledgebase of functional chemicals for synthetic biology studies

Mengying Han, Dachuan Zhang, Shaozhen Ding et al
Bioinformatics. Vol. 37 (22), p. 4275-4276
Journal article
2021

Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection

Hongzhong Lu, Feiran Li, Le Yuan et al
Molecular Systems Biology. Vol. 17 (10)
Journal article
2020

novoPathFinder: a webserver of designing novel-pathway with integrating GEM-model

Shaozhen Ding, Yu Tian, Pengli Cai et al
Nucleic Acids Research. Vol. 48 (W1), p. W477-W487
Journal article
2020

FRCD: A comprehensive food risk component database with molecular scaffold, chemical diversity, toxicity, and biodegradability analysis

Dachuan Zhang, Linlin Gong, Shaozhen Ding et al
Food Chemistry. Vol. 318
Journal article

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