Le Yuan

Publications (9)
Projects (0)

Showing 9 publications

2024

Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0

Yu Chen, Johan Gustafsson, Albert Tafur Rangel et al

Nature Protocols. Vol. 19 (3), p. 629-667

Journal article

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2023

HGTphyloDetect: facilitating the identification and phylogenetic analysis of horizontal gene transfer

Le Yuan, Hongzhong Lu, Feiran Li et al

Briefings in Bioinformatics. Vol. 24 (2)

Journal article

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2023

Advancing systems biology of yeast through machine learning and comparative genomics

Le Yuan

Doctoral thesis

2022

Deep learning-based k(cat) prediction enables improved enzyme-constrained model reconstruction

Feiran Li, Le Yuan, Hongzhong Lu et al

Nature Catalysis. Vol. 5 (8), p. 662-672

Journal article

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2022

Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints

Feiran Li, Yu Chen, Qi Qi et al

Nature Communications. Vol. 13 (1)

Journal article

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2021

ChemHub: a knowledgebase of functional chemicals for synthetic biology studies

Mengying Han, Dachuan Zhang, Shaozhen Ding et al

Bioinformatics. Vol. 37 (22), p. 4275-4276

Journal article

2021

Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection

Hongzhong Lu, Feiran Li, Le Yuan et al

Molecular Systems Biology. Vol. 17 (10)

Journal article

2020

novoPathFinder: a webserver of designing novel-pathway with integrating GEM-model

Shaozhen Ding, Yu Tian, Pengli Cai et al

Nucleic Acids Research. Vol. 48 (W1), p. W477-W487

Journal article

2020

FRCD: A comprehensive food risk component database with molecular scaffold, chemical diversity, toxicity, and biodegradability analysis

Dachuan Zhang, Linlin Gong, Shaozhen Ding et al

Food Chemistry. Vol. 318

Journal article

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