Veillonella, Firmicutes: Microbes disguised as Gram negatives
Journal article, 2013

The Firmicutes represent a major component of the intestinal microflora. The intestinal Firmicutes are a large, diverse group of organisms, many of which are poorly characterized due to their anaerobic growth requirements. Although most Firmicutes are Gram positive, members of the class Negativicutes, including the genus Veillonella, stain Gram negative. Veillonella are among the most abundant organisms of the oral and intestinal microflora of animals and humans, in spite of being strict anaerobes. In this work, the genomes of 24 Negativicutes, including eight Veillonella spp., are compared to 20 other Firmicutes genomes; a further 101 prokaryotic genomes were included, covering 26 phyla. Thus a total of 145 prokaryotic genomes were analyzed by various methods to investigate the apparent conflict of the Veillonella Gram stain and their taxonomic position within the Firmicutes. Comparison of the genome sequences confirms that the Negativicutes are distantly related to Clostridium spp., based on 16S rRNA, complete genomic DNA sequences, and a consensus tree based on conserved proteins. The genus Veillonella is relatively homogeneous: inter-genus pairwise comparison identifies at least 1,350 shared proteins, although less than half of these are found in any given Clostridium genome. Only 27 proteins are found conserved in all analyzed prokaryote genomes. Veillonella has distinct metabolic properties, and significant similarities to genomes of Proteobacteria are not detected, with the exception of a shared LPS biosynthesis pathway. The clade within the class Negativicutes to which the genus Veillonella belongs exhibits unique properties, most of which are in common with Gram-positives and some with Gram negatives. They are only distantly related to Clostridia, but are even less closely related to Gram-negative species. Though the Negativicutes stain Gram-negative and possess two membranes, the genome and proteome analysis presented here confirm their place within the (mainly) Gram positive phylum of the Firmicutes. Further studies are required to unveil the evolutionary history of the Veillonella and other Negativicutes.













T. Vesth

Technical University of Denmark (DTU)

A. Ozen

Technical University of Denmark (DTU)

S. C. Andersen

Technical University of Denmark (DTU)

R. S. Kaas

Technical University of Denmark (DTU)

O. Lukjancenko

Technical University of Denmark (DTU)

J. Bohlin

Norges veterinaerhogskole

Intawat Nookaew

Chalmers, Chemical and Biological Engineering, Life Sciences, System Biology

T. M. Wassenaar

Molecular Microbiology and Genomics Consultants

D. W. Ussery

Oak Ridge National Laboratory

Standards in Genomic Sciences

1944-3277 (ISSN)

Vol. 9 2 431-448

Subject Categories

Medical Genetics

Microbiology in the medical area



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