Intawat Nookaew

Gästforskare at Chalmers, Biology and Biological Engineering, Systems and Synthetic Biology

Showing 74 publications

2018

Genome Characterization of Oleaginous Aspergillus oryzae BCC7051: A Potential Fungal-Based Platform for Lipid Production

Chinae Thammarongtham, Intawat Nookaew, Tayvich Vorapreeda et al
Current Microbiology. Vol. 75 (1), p. 57-70
Journal article
2018

Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D

Piroon Jenjaroenpun, Thidathip Wongsurawat, Rui Pereira et al
Nucleic Acids Research. Vol. 46 (7)
Journal article
2017

Metabolomics and Integrative Omics for the Development of Thai Traditional Medicine

Sakda Khoomrung, Kwanjeera Wanichthanarak, Intawat Nookaew et al
Frontiers in Pharmacology. Vol. 8 (JUL)
Journal article
2017

Low-complexity microbiota in the duodenum of children with newly diagnosed ulcerative colitis

Fei Sjöberg, Cecilia Barkman, Intawat Nookaew et al
PLoS ONE. Vol. 12 (10)
Journal article
2017

Splenic Immune Response Is Down-Regulated in C57BL/6J Mice Fed Eicosapentaenoic Acid and Docosahexaenoic Acid Enriched High Fat Diet

Nikulkumar Soni, Alastair Ross, Nathalie Scheers et al
Nutrients. Vol. 9 (1), p. 50-
Journal article
2017

Evaluation and assessment of read-mapping by multiple next-generation sequencing aligners based on genome-wide characteristics

Subazini Thankaswamy, Partho Sen, Intawat Nookaew
Genomics. Vol. 109 (3-4), p. 186-191
Journal article
2017

In vivo analysis of the viable microbiota and Helicobacter pylori transcriptome in gastric infection and early stages of carcinogenesis

Kaisa Thorell, Johan Bengtsson-Palme, Oscar Hsin Fu Liu et al
Infection and Immunity. Vol. 85 (10)
Journal article
2016

Glycosaminoglycan Profiling in Patients' Plasma and Urine Predicts the Occurrence of Metastatic Clear Cell Renal Cell Carcinoma

Francesco Gatto, N. Volpi, H. Nilsson et al
Cell Reports. Vol. 15 (8), p. 1822-1836
Journal article
2016

Normalised immune expression in remission of paediatric ITP

Margareta Jernås, Frida Strömberg Célind, Intawat Nookaew et al
Thrombosis and Haemostasis. Vol. 115 (6), p. 1229-1230
Magazine article
2016

Six Tissue Transcriptomics Reveals Specific Immune Suppression in Spleen by Dietary Polyunsaturated Fatty Acids

Sara L Svahn, Leif Wigge, Britt Gabrielsson et al
PLoS ONE. Vol. 11 (5), p. Art. no. e0155099-
Journal article
2016

Comparative Analysis of Two Helicobacter pylori Strains using Genomics and Mass Spectrometry-Based Proteomics

R. Karlsson, Kaisa Thorell, Seyedeh Shaghayegh Hosseini et al
Frontiers in Microbiology. Vol. 7 (NOV), p. art. no. 1757 -
Journal article
2016

Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua

Kaisa Thorell, Seyed Vali Hesseini, Rvpp Gonzales et al
BMC Evolutionary Biology. Vol. 16 (1), p. art no 53-
Journal article
2016

Comparative Systems Analyses Reveal Molecular Signatures of Clinically tested Vaccine Adjuvants

T. A. Olafsdottir, M. Lindqvist, Intawat Nookaew et al
Scientific Reports. Vol. 6
Journal article
2016

Eicosapentaenoic and Docosahexaenoic Acid-Enriched High Fat Diet Delays Skeletal Muscle Degradation in Mice

Nikulkumar Soni, Alastair Ross, Nathalie Scheers et al
Nutrients. Vol. 8 (9), p. 543-
Journal article
2016

Voluntary Running Suppresses Tumor Growth through Epinephrine- and IL-6-Dependent NK Cell Mobilization and Redistribution

L. Pedersen, M. Idorn, G. H. Olofsson et al
Cell Metabolism. Vol. 23 (3), p. 554-562
Journal article
2016

Adenine-induced chronic renal failure in rats decreases aortic relaxation rate and alters expression of proteins involved in vascular smooth muscle calcium handling

L. Nguy, E. Shubbar, Margareta Jernås et al
Acta Physiologica. Vol. 218 (4), p. 250-264
Journal article
2015

Eicosapentaenoic and docosahexaenoic acid-enriched high fat diet delays the development of fatty liver in mice

Nikulkumar Soni, Intawat Nookaew, Ann-Sofie Sandberg et al
Lipids in Health and Disease. Vol. 14 (1), p. 74-
Journal article
2015

Molecular Mechanism of Flocculation Self-Recognition in Yeast and Its Role in Mating and Survival

K. V. Y. Goossens, F. S. Ielasi, Intawat Nookaew et al
mBio. Vol. 6 (2)
Journal article
2015

Dietary polyunsaturated fatty acids increase survival and decrease bacterial load during septic S. aureus infection, and improve neutrophil function in mice

Sara L Svahn, Louise Grahnemo, Vilborg Palsdottir et al
Infection and Immunity. Vol. 83 (2), p. 514-21
Journal article
2015

Site-specific programming of the host epithelial transcriptome by the gut microbiota

Felix Sommer, Intawat Nookaew, Nina Sommer et al
Genome Biology. Vol. 16 (1), p. Art. no. 62-
Journal article
2015

Human metabolic atlas: an online resource for human metabolism

Natapol Pornputtapong, Intawat Nookaew, Jens B Nielsen
Database : the journal of biological databases and curation. Vol. 2015
Journal article
2015

Proteome- and Transcriptome-Driven Reconstruction of the Human Myocyte Metabolic Network and Its Use for Identification of Markers for Diabetes

Leif Wigge, C. Scheele, C. Broholm et al
Cell Reports. Vol. 11 (6), p. 921-933
Journal article
2014

Metagenomic Data Utilization and Analysis (MEDUSA) and Construction of a Global Gut Microbial Gene Catalogue

Fredrik Karlsson, Intawat Nookaew, Jens B Nielsen
PLoS Computational Biology. Vol. 10 (7)
Journal article
2014

yStreX: yeast stress expression database

Kwanjeera Wanichthanarak, Intawat Nookaew, Dina Petranovic Nielsen
Database : the journal of biological databases and curation
Journal article
2014

BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data

Manuel Garcia, Subazini Thankaswamy, Avlant Nilsson et al
Nucleic Acids Research. Vol. 42 (W1), p. W175-W181
Journal article
2014

A dedicated database system for handling multi-level data in systems biology

Natapol Pornputtapong, Kwanjeera Wanichthanarak, Avlant Nilsson et al
Source Code for Biology and Medicine. Vol. 9 (1)
Journal article
2014

Chromosome 3p loss of heterozygosity is associated with a unique metabolic network in clear cell renal carcinoma

Francesco Gatto, Intawat Nookaew, Jens B Nielsen
Proceedings of the National Academy of Sciences of the United States of America. Vol. 111 (9), p. E866-E875
Journal article
2014

Genome-Scale Metabolic Models: A Link between Bioinformatics and Systems Biology

Jens B Nielsen, Sergio Velasco, Intawat Nookaew
Comprehensive Biomedical Physics, p. 165-173
Book chapter
2014

Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction

Ibrahim El-Semman, Fredrik Karlsson, Saeed Shoaie et al
BMC Systems Biology. Vol. 8 (41)
Journal article
2014

Physiological characterization of the high malic acid-producing Aspergillus oryzae strain 2103a-68

Christoph Knuf, Intawat Nookaew, Ilse Remmers et al
Applied Microbiology and Biotechnology. Vol. 98 (8), p. 3517-3527
Journal article
2013

FANTOM: Functional and taxonomic analysis of metagenomes

Kemal Sanli, Fredrik Karlsson, Intawat Nookaew et al
BMC Bioinformatics. Vol. 14 (1), p. artikel nr 38-
Journal article
2013

Integrated analysis, transcriptome-lipidome, reveals the effects of INO-level (INO2 and INO4) on lipid metabolism in yeast

Pramote Chumnanpuen, Intawat Nookaew, Jens B Nielsen
BMC Systems Biology. Vol. 7 (Suppl 3) (S7)
Journal article
2013

Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker

Intawat Nookaew, Kaisa Thorell, Kuntal Worah et al
BMC Medical Genomics. Vol. 6 (41)
Journal article
2013

Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling

Tobias Österlund, Intawat Nookaew, Sergio Velasco et al
BMC Systems Biology. Vol. 7
Journal article
2013

Rapid Quantification of Yeast Lipid using Microwave-Assisted Total Lipid Extraction and HPLC-CAD

Sakda Khoomrung, Pramote Chumnanpuen, Suwanee Jansa-Ard et al
Analytical Chemistry. Vol. 85 (10), p. 4912-4919
Journal article
2013

Adipose Tissue Resting Energy Expenditure and Expression of Genes Involved in Mitochondrial Function Are Higher in Women than in Men.

Intawat Nookaew, Per-Arne Svensson, Peter Jacobson et al
The Journal of clinical endocrinology and metabolism. Vol. 98 (2), p. E370-E378
Journal article
2013

Integration of clinical data with a genome-scale metabolic model of the human adipocyte

Adil Mardinoglu, Rasmus Ågren, C. Kampf et al
Molecular Systems Biology. Vol. 9 (1), p. 649-
Journal article
2013

MicroRNA regulate immune pathways in T-cells in multiple sclerosis (MS)

Margareta Jernås, Clas Malmeström, Markus Axelsson et al
BMC Immunology. Vol. 14 (32)
Journal article
2013

Novel insights into obesity and diabetes through genome-scale metabolic modeling

Leif Wigge, Intawat Nookaew, Jens B Nielsen
Frontiers in Physiology. Vol. 4 (92)
Journal article
2013

Mapping Condition-Dependent Regulation of Lipid Metabolism in Saccharomyces cerevisiae

M. C. Jewett, C. T. Workman, Intawat Nookaew et al
G3: Genes, Genomes, Genetics. Vol. 3 (11), p. 1979-1995
Journal article
2013

Maternal beef and postweaning herring diets increase bone mineral density and strength in mouse offspring.

Ays Hussain, Hanna Olausson, Staffan Nilsson et al
Experimental Biology and Medicine. Vol. 238 (12), p. 1362-9
Journal article
2013

Understanding the interactions between bacteria in the human gut through metabolic modeling

Saeed Shoaie, Fredrik Karlsson, Adil Mardinoglu et al
Scientific Reports. Vol. 3
Journal article
2013

Differential expression of T-cell genes in blood and bone marrow between ITP patients and controls

Margareta Jernås, Intawat Nookaew, Hans Wadenvik et al
Thrombosis and Haemostasis. Vol. 109 (1), p. 112-117
Journal article
2013

Differences in gene expression and cytokine levels between newly diagnosed and chronic pediatric ITP.

Margareta Jernås, Yu Hou, Frida Strömberg Célind et al
Blood. Vol. 122 (10), p. 1789-92
Journal article
2013

A community-driven global reconstruction of human metabolism

I. Thiele, N. Swainston, R. M. T. Fleming et al
Nature Biotechnology. Vol. 31 (5), p. 419-+
Journal article
2013

MicroRNA regulate immunological pathways in T-cells in immune thrombocytopenia (ITP)

Margareta Jernås, Intawat Nookaew, Hans Wadenvik et al
Blood. Vol. 121 (11), p. 2095-2098
Journal article
2013

Veillonella, Firmicutes: Microbes disguised as Gram negatives

T. Vesth, A. Ozen, S. C. Andersen et al
Standards in Genomic Sciences. Vol. 9 (2), p. 431-448
Journal article
2013

Investigation of Malic Acid Production in Aspergillus oryzae under Nitrogen Starvation Conditions

Christoph Knuf, Intawat Nookaew, Stephen H. Brown et al
Applied and Environmental Microbiology. Vol. 79 (19), p. 6050-6058
Journal article
2013

The impact of rituximab therapy in multiple sclerosis on cerebrospinal fluid cell gene expression

Margareta Jernås, C. Malmestrom, Intawat Nookaew et al
Multiple Sclerosis. Vol. 19 (11), p. 230-231
Paper in proceedings
2013

The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum

Rasmus Ågren, Liming Liu, Saeed Shoaie et al
PLoS Computational Biology. Vol. 9 (3), p. e1002980-
Journal article
2013

MS risk genes are transcriptionally regulated in CSF leukocytes at relapse

Margareta Jernås, Clas Malmeström, Markus Axelsson et al
Multiple Sclerosis. Vol. 19 (4), p. 403-410
Journal article
2013

Gut metagenome in European women with normal, impaired and diabetic glucose control

Fredrik Karlsson, Valentina Tremaroli, Intawat Nookaew et al
Nature. Vol. 498 (7452), p. 99-103
Journal article
2013

Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods

Leif Väremo, Jens B Nielsen, Intawat Nookaew
Nucleic Acids Research. Vol. 41 (8), p. 4378-4391
Journal article
2012

Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT

Rasmus Ågren, Sergio Velasco, Adil Mardinoglu et al
PLoS Computational Biology (5)
Journal article
2012

Symptomatic atherosclerosis is associated with an altered gut metagenome

Fredrik Karlsson, Frida Fåk, Intawat Nookaew et al
Nature Communications. Vol. 3
Journal article
2012

Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88

E. G. Larsson, Valentina Tremaroli, Ying Shiuan Lee et al
Gut. Vol. 61 (8), p. 1124-1131
Journal article
2012

Fifteen years of large scale metabolic modeling of yeast: Developments and impacts

Tobias Österlund, Intawat Nookaew, Jens B Nielsen
Biotechnology Advances. Vol. 30 (5), p. 979-988
Journal article
2012

Physiological characterization of recombinant Saccharomyces cerevisiae expressing the Aspergillus nidulans phosphoketolase pathway: validation of activity through (13)C-based metabolic flux analysis.

Marta Papini, Intawat Nookaew, Verena Siewers et al
Applied Microbiology and Biotechnology. Vol. 95 (4), p. 1001-1010
Journal article
2012

Scheffersomyces stipitis: a comparative systems biology study with the Crabtree positive yeast Saccharomyces cerevisiae

Marta Papini, Intawat Nookaew, M. Uhlen et al
Microbial Cell Factories. Vol. 11, p. Article Number: 136 -
Journal article
2012

Fast and accurate preparation fatty acid methyl esters by microwave-assisted derivatization in the yeast Saccharomyces cerevisiae

Sakda Khoomrung, Pramote Chumnanpuen, Suwanee Jansa-Ard et al
Applied Microbiology and Biotechnology. Vol. 94 (6), p. 1637-1646
Journal article
2012

Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in-silico evaluation of their potentials

Luis Caspeta-Guadarrama, Saeed Shoaie, Rasmus Ågren et al
BMC Systems Biology. Vol. 6 (24)
Journal article
2012

Integrated analysis of transcriptome and lipid profiling reveals the co-influences of inositol-choline and Snf1 in controlling lipid biosynthesis in yeast

Pramote Chumnanpuen, Jie Zhang, Intawat Nookaew et al
Molecular Genetics and Genomics. Vol. 287 (7), p. 541-554
Journal article
2011

A Closer Look at Bacteroides: Phylogenetic Relationship and Genomic Implications of a Life in the Human Gut

Fredrik Karlsson, D. W. Ussery, Jens B Nielsen et al
Microbial Ecology. Vol. 61 (3), p. 473-485
Journal article
2011

Unraveling molecular signatures of immunostimulatory adjuvants in the female genital tract through systems biology

M. Lindqvist, Intawat Nookaew, Ingrid Brinkenberg et al
PLoS ONE. Vol. 6 (6), p. e20448-
Journal article
2011

Genome-scale metabolic models of Saccharomyces cerevisiae

Intawat Nookaew, Roberto Olivares Hernandez, S. Bhumiratana et al
Methods in Molecular Biology, p. 445-463
Book chapter
2011

Prospects for systems biology and modeling of the gut microbiome

Fredrik Karlsson, Intawat Nookaew, Dina Petranovic Nielsen et al
Trends in Biotechnology. Vol. 29 (6), p. 251-258
Journal article
2010

Transcriptional progression of atrophic gastritis development in humans

S. Lundin, Intawat Nookaew, K. Worah et al
Helicobacter. Vol. 15 (4), p. 323-324
Journal article
2010

Identifying molecular effects of diet through systems biology: influence of herring diet on sterol metabolism and protein turnover in mice

Intawat Nookaew, Britt Gabrielsson, Agneta Holmäng et al
PLoS ONE. Vol. 5 (8), p. e12361-
Journal article
2010

BioMet Toolbox: genome-wide analysis of metabolism

Marija Cvijovic, Roberto Olivares Hernandez, Rasmus Ågren et al
Nucleic Acids Research. Vol. 38 (SUPPL. 2), p. W144-W149
Journal article
2010

Analysis of Genome-Wide Coexpression and Coevolution of Aspergillus oryzae and Aspergillus niger

Wanwipa Vongsangnak, Intawat Nookaew, Margarita Salazar Pena et al
OMICS A Journal of Integrative Biology. Vol. 14 (2), p. 165-175
Journal article
2010

Phosphoglycerate mutase knock-out mutant Saccharomyces cerevisiae: Physiological investigation and transcriptome analysis

Marta Papini, Intawat Nookaew, Gionata Scalcinati et al
Biotechnology journal. Vol. 5 (10), p. 1016-1027
Journal article
2008

The genome-scale metabolic model ilN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism

Intawat Nookaew, Michael C Jewett, Asawin Meechai et al
BMC Systems Biology. Vol. 2 (71)
Journal article

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