Filamentous fungi display different behavior during spruce bark degradation.
Conference poster, 2023
Here, we have followed fungi growing on spruce bark over six months, including white-rot (Dichomitus squalens), brown-rot (Postia placenta), as well as three Ascomycetes (Trichoderma reesei, Penicillium crustosum, Trichoderma sp. B1). The changes in the material were analyzed continuously using a combination of mass-loss determination, GC-MS, HPAEC-PAD, to monitor overall changes as well as detailed changes in extractives, carbohydrates, and lignin. These data enabled a comparison of the growth and substrate metabolism of five different fungi growing on the bark. The fungi exhibited clearly different approaches to the extractive compounds – from simply tolerating them, to detoxification and/or fully metabolizing them. Also carbohydrate analyses revealed significant differences among the fungi, with the brown-rot fungus P. placenta displaying the typical hemicellulose first – cellulose second type of degradation pattern. From compositional analyses, D. squalens had the highest mass-loss (30%) and was quickest to reach stationary phase (12 weeks), and was able to significantly modify extractives and polysaccharides, in particular monosaccharides derived from pectin and xylan. Therefore, additional proteomic analyses was performed on D. squalens grown on bark, acetone-extracted bark (i.e. extractive-less), and galactomannan. The results revealed little difference in the proteome composition between acetone-extracted bark and bark, however, were identified. In particular, carbohydrate-active enzymes (CAZymes) related to pectin and xylan degradation were upregulated in the bark samples.
Our results suggest that D. squalens, P. placenta, T. reesei, P. crustosum, Trichoderma sp. B1 have different substrate preferences, in particular, extractives are either degraded or tolerated. Significant changes could also be found in carbohydrate composition revealing pectin degradation. This work forms a basis for an understanding fungal degradation of bark.
spruce
bark
proteomics
fungi
Author
Amanda Sörensen Ristinmaa
Chalmers, Life Sciences, Industrial Biotechnology
Ekaterina Korotkova
Åbo Akademi
Magnus Artzen
Norwegian University of Life Sciences
Chunlin Xu
Åbo Akademi
Anna Sundberg
Åbo Akademi
Merima Hasani
Chalmers, Chemistry and Chemical Engineering, Chemical Technology
Johan Larsbrink
Chalmers, Life Sciences, Industrial Biotechnology
Andover, USA,
Biochemical conversion of bark
Swedish Energy Agency (46559-1), 2019-04-08 -- 2023-10-31.
Subject Categories
Biological Sciences
Infrastructure
Chalmers Materials Analysis Laboratory