Mapping of the gene network that regulates glycan clock of ageing
Artikel i vetenskaplig tidskrift, 2023
Glycans are an essential structural component of immunoglobulin G (IgG) that modulate its structure and function. However, regulatory mechanisms behind this complex posttranslational modification are not well known. Previous genome-wide association studies (GWAS) identified 29 genomic regions involved in regulation of IgG glycosylation, but only a few were functionally validated. One of the key functional features of IgG glycosylation is the addition of galactose (galactosylation), a trait which was shown to be associated with ageing. We performed GWAS of IgG galactosylation (N=13,705) and identified 16 significantly associated loci, indicating that IgG galactosylation is regulated by a complex network of genes that extends beyond the galactosyltransferase enzyme that adds galactose to IgG glycans. Gene prioritization identified 37 candidate genes. Using a recently developed CRISPR/dCas9 system we manipulated gene expression of candidate genes in the in vitro IgG expression system. Upregulation of three genes, EEF1A1, MANBA and TNFRSF13B, changed the IgG glycome composition, which confirmed that these three genes are involved in IgG galactosylation in this in vitro expression system.
CRISPR/dCas9
genome-wide association study
glycosylation
glycan clock
immunoglobulin G
Författare
Azra Frkatović-Hodžić
Genos
Anika Mijakovac
Sveučilište u Zagrebu
Karlo Miškec
Sveučilište u Zagrebu
Arina Nostaeva
Novosibirsk State University
Sodbo Z. Sharapov
Moscow State University
Arianna Landini
Victoria University of Wellington
Toomas Haller
Tartu Ülikool
Erik van den Akker
TU Delft
Universiteit Leiden
Sapna Sharma
Helmholtz-Gemeinschaft Deutscher Forschungszentren
Deutsches Zentrum für Diabetesforschung (DZD)
Rafael R.C. Cuadrat
Deutsches Zentrum für Diabetesforschung (DZD)
Helmholtz-Gemeinschaft Deutscher Forschungszentren
Massimo Mangino
King's College London
NHS Foundation Trust
Yong Li
Universitats Klinikum Freiburg und Medizinische Fakultat
Toma Keser
Sveučilište u Zagrebu
Najda Rudman
Sveučilište u Zagrebu
Tamara Stambuk
Genos
Maja Pučić-Baković
Genos
Irena Trbojević-Akmačić
Genos
Ivan Gudelj
University of Rijeka
Genos
Jerko Štambuk
Genos
Tea Pribić
Genos
Barbara Radovani
University of Rijeka
Genos
Petra Tominac
Genos
Krista Fischer
Tartu Ülikool
Marian Beekman
Universiteit Leiden
Manfred Wuhrer
Universiteit Leiden
Christian Gieger
Deutsches Zentrum für Diabetesforschung (DZD)
Helmholtz-Gemeinschaft Deutscher Forschungszentren
Matthias B. Schulze
Universität Potsdam
Deutsches Institut für Ernährungsforschung
Deutsches Zentrum für Diabetesforschung (DZD)
Clemens Wittenbecher
Deutsches Institut für Ernährungsforschung
Chalmers, Life sciences, Livsmedelsvetenskap
Harvard School of Public Health
Ozren Polasek
University of Split
Algebra Bernays University
Caroline Hayward
Edinburgh Medical School, Medical Research Council Human Genetics Unit
James F. Wilson
Edinburgh Medical School, Medical Research Council Human Genetics Unit
Victoria University of Wellington
Tim D. Spector
King's College London
Anna Köttgen
Johns Hopkins University
Universitats Klinikum Freiburg und Medizinische Fakultat
Frano Vučković
Genos
Yurii S. Aulchenko
Moscow State University
Russian Academy of Sciences
Aleksandar Vojta
Sveučilište u Zagrebu
Jasminka Krištić
Genos
Lucija Klarić
Edinburgh Medical School, Medical Research Council Human Genetics Unit
Vlatka Zoldoš
Sveučilište u Zagrebu
Gordan Lauc
Sveučilište u Zagrebu
Genos
Aging
19454589 (eISSN)
Vol. 15 24 14509-14552Ämneskategorier (SSIF 2011)
Medicinsk genetik
DOI
10.18632/aging.205106
PubMed
38149987