Avlant Nilsson
Post doc at
Systems and Synthetic Biology
Showing 13 publications
2020
An atlas of human metabolism
Jonathan Robinson, Pinar Kocabas, Hao Wang et al
Science signaling. Vol. 13 (624)
Journal article
2020
Quantitative analysis of amino acid metabolism in liver cancer links glutamate excretion to nucleotide synthesis
Avlant Nilsson, J. R. Haanstra, Martin Engqvist et al
Proceedings of the National Academy of Sciences of the United States of America. Vol. 117 (19), p. 10294-10304
Journal article
2019
Complex I is bypassed during high intensity exercise
Avlant Nilsson, Elias Björnson, Mikael Flockhart et al
Nature Communications. Vol. 10 (1)
Journal article
2019
Constraint-based modeling of metabolism - interpreting predictions of growth and ATP synthesis in human and yeast
Avlant Nilsson
Doctoral thesis
2018
Recon3D enables a three-dimensional view of gene variation in human metabolism
Elizabeth Brunk, S. Sahoo, Daniel C. Zielinski et al
Nature Biotechnology. Vol. 36 (3), p. 272-281
Journal article
2018
Metabolite Depletion Affects Flux Profiling of Cell Lines
Avlant Nilsson, J. R. Haanstra, B. Teusink et al
Trends in Biochemical Sciences. Vol. 43 (6), p. 395-397
Introductory text in journal
2017
Genome scale metabolic modeling of cancer
Avlant Nilsson, Jens B Nielsen
Metabolic Engineering. Vol. 43, p. 103-112
Journal article
2017
Predicting growth of the healthy infant using a genome scale metabolic model.
Avlant Nilsson, Adil Mardinoglu, Jens B Nielsen
NPJ systems biology and applications. Vol. 3, p. 3-
Journal article
2017
Metabolic Models of Protein Allocation Call for the Kinetome
Avlant Nilsson, Jens B Nielsen, Bernhard O Palsson
Cell Systems. Vol. 5 (6), p. 538-541
Introductory text in journal
2017
Improving the phenotype predictions of a yeast genome-scale metabolic model by incorporating enzymatic constraints
Benjamin José Sanchez Barja, C. Zhang, Avlant Nilsson et al
Molecular Systems Biology. Vol. 13 (8), p. Article no 935 -
Journal article
2016
Metabolic Trade-offs in Yeast are Caused by F1F0-ATP synthase
Avlant Nilsson, Jens B Nielsen
Scientific Reports. Vol. 6
Journal article
2014
BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data
Manuel Garcia, Subazini Thankaswamy, Avlant Nilsson et al
Nucleic Acids Research. Vol. 42 (W1), p. W175-W181
Journal article
2014
A dedicated database system for handling multi-level data in systems biology
Natapol Pornputtapong, Kwanjeera Wanichthanarak, Avlant Nilsson et al
Source Code for Biology and Medicine. Vol. 9 (1)
Journal article
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Showing 2 research projects
2020–2023
Deep Learning the Immune System
Ivan Mijakovic
Systems and Synthetic Biology
Avlant Nilsson
Systems and Synthetic Biology
Swedish Research Council (VR)
2014–2018
Integrating Modelling of Metabolism and Signalling towards an Application in Liver Cancer (ERASysAPP - IMOMESIC)
Jens B Nielsen
Biology and Biological Engineering
Avlant Nilsson
Systems and Synthetic Biology
Adil Mardinoglu
Systems and Synthetic Biology
Swedish Research Council (VR)
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