Avlant Nilsson

Researcher at Systems and Synthetic Biology

Contact Details ORCID

Publications (15)
Projects (2)

Showing 15 publications

2022

Artificial neural networks enable genome-scale simulations of intracellular signaling

Avlant Nilsson, Joshua M. Peters, Nikolaos Meimetis et al

Nature Communications. Vol. 13 (1)

Journal article

2022

Cancer-Associated Fibroblasts and Squamous Epithelial Cells Constitute a Unique Microenvironment in a Mouse Model of Inflammation-Induced Colon Cancer

Paige N. Vega, Avlant Nilsson, Manu P. Kumar et al

Frontiers in Oncology. Vol. 12

Journal article

2020

An atlas of human metabolism

Jonathan Robinson, Pinar Kocabas, Hao Wang et al

Science signaling. Vol. 13 (624)

Journal article

2020

Quantitative analysis of amino acid metabolism in liver cancer links glutamate excretion to nucleotide synthesis

Avlant Nilsson, J. R. Haanstra, Martin Engqvist et al

Proceedings of the National Academy of Sciences of the United States of America. Vol. 117 (19), p. 10294-10304

Journal article

2019

Complex I is bypassed during high intensity exercise

Avlant Nilsson, Elias Björnson, Mikael Flockhart et al

Nature Communications. Vol. 10 (1)

Journal article

2019

Constraint-based modeling of metabolism - interpreting predictions of growth and ATP synthesis in human and yeast

Avlant Nilsson

Doctoral thesis

Show project

2018

Recon3D enables a three-dimensional view of gene variation in human metabolism

Elizabeth Brunk, S. Sahoo, Daniel C. Zielinski et al

Nature Biotechnology. Vol. 36 (3), p. 272-281

Journal article

2018

Metabolite Depletion Affects Flux Profiling of Cell Lines

Avlant Nilsson, J. R. Haanstra, B. Teusink et al

Trends in Biochemical Sciences. Vol. 43 (6), p. 395-397

Other text in scientific journal

2017

Genome scale metabolic modeling of cancer

Avlant Nilsson, Jens B Nielsen

Metabolic Engineering. Vol. 43, p. 103-112

Review article

2017

Predicting growth of the healthy infant using a genome scale metabolic model.

Avlant Nilsson, Adil Mardinoglu, Jens B Nielsen

NPJ systems biology and applications. Vol. 3, p. 3-

Journal article

2017

Metabolic Models of Protein Allocation Call for the Kinetome

Avlant Nilsson, Jens B Nielsen, Bernhard O Palsson

Cell Systems. Vol. 5 (6), p. 538-541

Other text in scientific journal

2017

Improving the phenotype predictions of a yeast genome-scale metabolic model by incorporating enzymatic constraints

Benjamin José Sanchez Barja, C. Zhang, Avlant Nilsson et al

Molecular Systems Biology. Vol. 13 (8), p. Article no 935 -

Journal article

2016

Metabolic Trade-offs in Yeast are Caused by F1F0-ATP synthase

Avlant Nilsson, Jens B Nielsen

Scientific Reports. Vol. 6

Journal article

2014

BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data

Manuel Garcia, Subazini Thankaswamy, Avlant Nilsson et al

Nucleic Acids Research. Vol. 42 (W1), p. W175-W181

Journal article

Show project

2014

A dedicated database system for handling multi-level data in systems biology

Natapol Pornputtapong, Kwanjeera Wanichthanarak, Avlant Nilsson et al

Source Code for Biology and Medicine. Vol. 9 (1)

Journal article

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Showing 2 research projects

2020–2023

Deep Learning the Immune System

Ivan Mijakovic Systems and Synthetic Biology

Avlant Nilsson Systems and Synthetic Biology

Swedish Research Council (VR)

2014–2018

Integrating Modelling of Metabolism and Signalling towards an Application in Liver Cancer (ERASysAPP - IMOMESIC)

Jens B Nielsen Biology and Biological Engineering

Avlant Nilsson Systems and Synthetic Biology

Adil Mardinoglu Systems and Synthetic Biology

Swedish Research Council (VR)

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