Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)
Artikel i vetenskaplig tidskrift, 2016
Recent molecular studies have identified substantial fungal diversity in indoor environments. Fungi and fungal particles have been linked to a range of potentially unwanted effects in the built environment, including asthma, decay of building materials, and food spoilage. The study of the built mycobiome is hampered by a number of constraints, one of which is the poor state of the metadata annotation of fungal DNA sequences from the built environment in public databases. In order to enable precise interrogation of such data – for example, “retrieve all fungal sequences recovered from bathrooms” – a workshop was organized at the University of Gothenburg (May 23-24, 2016) to annotate public fungal barcode (ITS) sequences according to the MIxS-Built Environment annotation standard (http://gensc.org/mixs/). The 36 participants assembled a total of 45,488 data points from the published literature, including the addition of 8,430 instances of countries of collection from a total of 83 countries, 5,801 instances of building types, and 3,876 instances of surface-air contaminants. The results were implemented in the UNITE database for molecular identification of fungi (http://unite.ut.ee) and were shared with other online resources. Data obtained from human/animal pathogenic fungi will furthermore be verified on culture based metadata for subsequent inclusion in the ISHAM-ITS database (http://its.mycologylab.org).
ITS
Annotation
Indoor fungi
Mycobiome
Built environment
Författare
Kessy Abarenkov
Tartu Ülikool
Rachel I. Adams
University of California
Irinyi Laszlo
Westmead Institute for Medical Research
The University of Sydney
Westmead Hospital
Ahto Agan
Estonian Institute of Ecology
Elia Ambrosio
Estonian Institute of Ecology
Tartu Ülikool
Alexandre Antonelli
Göteborgs universitet
Mohammad Bahram
Evolutionary Biology Centre
Estonian Institute of Ecology
Johan Bengtsson-Palme
Göteborgs universitet
Gunilla Bok
SP Sveriges Tekniska Forskningsinstitut AB
Patrik Cangren
Göteborgs universitet
Victor R. M. Coimbra
Göteborgs universitet
Claudia Coleine
Universita degli Studi della Tuscia
Claes G. R. Gustafsson
Göteborgs universitet
Jinhong He
Chinese Academy of Sciences
Tobias Hofmann
Göteborgs universitet
Erik Kristiansson
Göteborgs universitet
Chalmers, Matematiska vetenskaper, Matematisk statistik
Ellen Larsson
Göteborgs universitet
Tomas Larsson
Göteborgs universitet
Yingkui Liu
Göteborgs universitet
Svante Martinsson
Göteborgs universitet
Wieland Meyer
Westmead Institute for Medical Research
Westmead Hospital
The University of Sydney
Marina Panova
Göteborgs universitet
Nuttapon Pombubpa
University of California
Camila Ritter
Göteborgs universitet
Martin Ryberg
Evolutionary Biology Centre
Sten Svantesson
Göteborgs universitet
Ruud Scharn
Göteborgs universitet
Ola Svensson
Göteborgs universitet
Mats H. Töpel
Göteborgs universitet
Martin Unterseher
Universität Greifswald
Cobus Visagie
Agriculture et Agroalimentaire Canada
University of Ottawa
Christian Wurzbacher
Göteborgs universitet
Andy F.S. Taylor
University of Aberdeen
The James Hutton Institute
Urmas Kõljalg
Tartu Ülikool
Estonian Institute of Ecology
Lynn Schriml
University of Maryland
R. Henrik Nilsson
Göteborgs universitet
MycoKeys
1314-4057 (ISSN) 1314-4049 (eISSN)
Vol. 16 1-15Ämneskategorier
Evolutionsbiologi
Botanik
Biologisk systematik
Byggproduktion
Immunologi
Ekologi
Mikrobiologi
Bioinformatik (beräkningsbiologi)
Systemvetenskap
Mikrobiologi inom det medicinska området
Bioinformatik och systembiologi
Miljömedicin och yrkesmedicin
Datavetenskap (datalogi)
Drivkrafter
Hållbar utveckling
DOI
10.3897/mycokeys.16.10000