Erik Kristiansson
My research is focused on the analysis and interpretation of complex datasets from molecular biology and medicine using methods from statistics, machine learning, and AI. Applications are, currently, primarily within infectious diseases, antibiotic resistance, and the environmental sciences.
See https://scholar.google.com/citations?user=WauDzPUAAAAJ&hl=sv for a list of my publications.
Visar 187 publikationer
Transformers enable accurate prediction of acute and chronic chemical toxicity in aquatic organisms
How, not if, is the question mycologists should be asking about DNA-based typification
Evidence for wastewaters as environments where mobile antibiotic resistance genes emerge
The curse of the uncultured fungus
An updated phylogeny of the metallo-β-lactamases
A framework for identifying the recent origins of mobile antibiotic resistance genes
SMAD4 haploinsufficiency in small intestinal neuroendocrine tumors
MYO5B Mutations in Pheochromocytoma/Paraganglioma Promote Cancer Progression
Structural and biochemical characterization of the environmental MBLs MYO-1, ECV-1 and SHD-1
Cultivation-Free Typing of Bacteria Using Optical DNA Mapping
Predicting clinical resistance prevalence using sewage metagenomic data
MYO5B mutations in pheochromocytoma/paraganglioma promote cancer progression
When mycologists describe new species, not all relevant information is provided (clearly enough)
A comprehensive survey of integron-associated genes present in metagenomes
The Association between Insertion Sequences and Antibiotic Resistance Genes
Phosphorylated CtIP bridges DNA to promote annealing of broken ends
Pharmacology beyond the patient – The environmental risks of human drugs
Modelling of zero-inflation improves inference of metagenomic gene count data
Identification and reconstruction of novel antibiotic resistance genes from metagenomes
Sewage from Airplanes Exhibits High Abundance and Diversity of Antibiotic Resistance Genes
PER extended-spectrum β-lactamases originate from Pararheinheimera spp
Bacterial identification by optical mapping of genomic DNA in nanofluidic channels
The mobile FOX AmpC beta-lactamases originated in Aeromonas allosaccharophila
177 Lu-octreotate therapy for neuroendocrine tumours is enhanced by Hsp90 inhibition
Introducing ribosomal tandem repeat barcoding for fungi
ECOdrug: A database connecting drugs and conservation of their targets across species
The resistomes of six carbapenem-resistant pathogens - a critical genotype-phenotype analysis
The neuroendocrine phenotype, genomic profile and therapeutic sensitivity of GEPNET cell lines
Computational and Statistical Considerations in the Analysis of Metagenomic Data
Environmental factors influencing the development and spread of antibiotic resistance
Comparison of normalization methods for the analysis of metagenomic gene abundance data
HirBin: High-resolution identification of differentially abundant functions in metagenomes
Integrative analysis of omics data
Using metagenomics to investigate human and environmental resistomes
Does antifouling paint select for antibiotic resistance?
Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics
Discovery of the fourth mobile sulfonamide resistance gene
Draft Genome Sequence of Streptococcus gordonii Type Strain CCUG 33482T.
Draft Genome Sequence of Moraxella catarrhalis Type Strain CCUG 353T.
Biomarker responses in eelpouts from four coastal areas in Sweden, Denmark and Germany
Malignant pheochromocytomas/paragangliomas harbor mutations in transport and cell adhesion genes.
Detailed characterization of plasmids carrying resistance genes using optical DNA mapping
The structure and diversity of human, animal and environmental resistomes
HattCI: Fast and Accurate attC site Identification Using Hidden Markov Models.
The human gut microbiome as a transporter of antibiotic resistance genes between continents
Quinolone resistance mutations in the faecal microbiota of Swedish travellers to India
Tentacle: distributed quantification of genes in metagenomes
Genetic Copy Number Variations in Colon Mucosa Indicating Risk for Colorectal Cancer.
BacMet: antibacterial biocide and metal resistance genes database
Expression of the glucocorticoid receptor is decreased in experimental Staphylococcus aureus sepsis.
Incorporating molecular data in fungal systematics: a guide for aspiring researchers
Functional verification of computationally predicted qnr genes
A novel method for cross-species gene expression analysis
Does ketoprofen or diclofenac pose the lowest risk to fish?
Antibiotika i miljön tros öka risken för spridning av resistensgener mellan arter.
Environmental Comparative Pharmacology: Theory and application
Environmental microbial communities living under very high antibiotic selection pressure
Antibiotic-contaminated effluent promotes mobile resistance in environmental baceria
Hypoxia stimulates CXCR4 signalling in ileal carcinoids.
An open source chimera checker for the fungal ITS region
An open source chimera checker for the fungal ITS region
Predicting functional upstream open reading frames in Saccharomyces cerevisiae
Evolutionary Forces Act on Promoter Length: Identification of Enriched Cis-Regulatory Elements
Genetic basis of arsenite and cadmium tolerance in Saccharomyces cerevisiae.
A software pipeline for processing and identification of fungal ITS sequences
Dose-response effects on global hepatic gene expression in rainbow trout exposed to diclofenac
ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
identification of novel biomarkers - a framework for cross-species gene expression analysis
Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota)
Weighted Analysis of General Microarray Experiments
Sensitive and robust gene expression changes in fish exposed to estrogen – a microarray approach
Weighted Analysis of General Microarray Experiments
Quality Optimised Analysis of General Paired Microarray Experiments
Taxonomic reliability of DNA sequences in public sequence databases: A fungal perspective
Quality Optimised Analysis of General Paired Microarray Experiments
A new Method for Analysis of microarray Gene Expression Assays
Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals
Weighted Analysis of Paired Microarray Experiments
Weighted Analysis of Paired Microarray Experiments
Identifying factors involved in the cellular response to arsenic
Identifying factors involved in the cellular response to arsenic
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Visar 16 forskningsprojekt
Predicting the future spread of antibiotic resistance genes, has been granted funding
Förbättrad metodik för källspårning av dioxiner i förorenade sediment (TRACED)
Nya resistensgener mot antibiotik: mobilisering, överföring och selektion
Hur Påverkar Smudging Miljöreglering?
Utvärdering av reglering av farliga kemikalier i Europa
JPIAMR-nätverk för sekvensering av mikroorganismer och antimikrobiell resistens (Seq4AMR)
Nya resistensgener mot antibiotika och deras spridning i miljön
Miljöns roll för utveckling och spridning av antibiotikaresistens
A novel ultrafast method for detecting multiresistant bacteria in intensive care units
Centrum för framtidens kemiska riskanalyser och styrning FRAM
Nya karbapenemaser - den outforskade reservoaren i miljön
Nya metoder för statistisk inferens i kvantitativ metagenomik
NICE - ny metodik för effektbaserad bedömning av kemisk förorening i kustekosystem.