Erik Kristiansson

Professor vid Tillämpad matematik och statistik

My research is focused on the analysis and interpretation of complex datasets from molecular biology and medicine using methods from statistics, machine learning, and AI. Applications are, currently, primarily within infectious diseases, antibiotic resistance, and the environmental sciences.

See https://scholar.google.com/citations?user=WauDzPUAAAAJ&hl=sv for a list of my publications.

Källa: chalmers.se
Image of Erik Kristiansson

Visar 187 publikationer

2024

The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered

Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson et al
Nucleic Acids Research. Vol. 52 (D1), p. D791-D797
Artikel i vetenskaplig tidskrift
2024

Transformers enable accurate prediction of acute and chronic chemical toxicity in aquatic organisms

Mikael Gustavsson, Styrbjörn Käll, Patrik Svedberg et al
Science advances. Vol. 10 (10)
Artikel i vetenskaplig tidskrift
2023

Extensive screening reveals previously undiscovered aminoglycoside resistance genes in human pathogens

David Lund, Roelof Dirk Coertze, Marcos Parras Moltó et al
Communications Biology. Vol. 6 (1)
Artikel i vetenskaplig tidskrift
2023

Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes

Juan Salvador Inda Diaz, David Lund, Marcos Parras Moltó et al
Microbiome. Vol. 11 (1), p. 44-
Artikel i vetenskaplig tidskrift
2023

Risk assessment of chemicals and their mixtures are hindered by scarcity and inconsistencies between different environmental exposure limits

Mikael Gustavsson, Sverker Molander, Thomas Backhaus et al
Environmental Research. Vol. 225
Artikel i vetenskaplig tidskrift
2023

Phenotypic and transcriptomic acclimation of the green microalga Raphidocelis subcapitata to high environmental levels of the herbicide diflufenican

Daniela Gómez-Martínez, Johanna Bengtson, Anders K. Nilsson et al
Science of the Total Environment. Vol. 875
Artikel i vetenskaplig tidskrift
2023

How, not if, is the question mycologists should be asking about DNA-based typification

R. Henrik Nilsson, Martin Ryberg, Christian Wurzbacher et al
MycoKeys. Vol. 96 (96), p. 143-157
Artikel i vetenskaplig tidskrift
2023

Dataset on aquatic ecotoxicity predictions of 2697 chemicals, using three quantitative structure-activity relationship platforms

Patrik Svedberg, Pedro A. Inostroza, Mikael Gustavsson et al
Data in Brief. Vol. 51
Artikel i vetenskaplig tidskrift
2023

Evidence for wastewaters as environments where mobile antibiotic resistance genes emerge

Fanny Berglund, Stefan Ebmeyer, Erik Kristiansson et al
Communications Biology. Vol. 6 (1)
Artikel i vetenskaplig tidskrift
2022

The impact of the ST131 clone on recurrent ESBL-producing E. coli urinary tract infection: a prospective comparative study

Anna Lindblom, Camilla Kiszakiewicz, Erik Kristiansson et al
Scientific Reports. Vol. 12 (1)
Artikel i vetenskaplig tidskrift
2022

GEnView: a gene-centric, phylogeny-based comparative genomics pipeline for bacterial genomes and plasmids

Stefan Ebmeyer, Roelof Dirk Coertze, Fanny Berglund et al
Bioinformatics. Vol. 38 (6), p. 1727-1728
Artikel i vetenskaplig tidskrift
2022

Estimating the release of chemical substances from consumer products, textiles and pharmaceuticals to wastewater

Mikael Gustavsson, Sverker Molander, Thomas Backhaus et al
Chemosphere. Vol. 287
Artikel i vetenskaplig tidskrift
2022

Large-scale characterization of the macrolide resistome reveals high diversity and several new pathogen-associated genes

David Lund, Nicolas Kieffer, Marcos Parras Moltó et al
Microbial Genomics. Vol. 8 (1)
Artikel i vetenskaplig tidskrift
2022

Economic interests cloud hazard reductions in the European regulation of substances of very high concern

Jessica Coria, Erik Kristiansson, Mikael Gustavsson
Nature Communications. Vol. 13 (1)
Artikel i vetenskaplig tidskrift
2022

The curse of the uncultured fungus

Kessy Abarenkov, Erik Kristiansson, M. Ryberg et al
MycoKeys. Vol. 86, p. 177-194
Artikel i vetenskaplig tidskrift
2021

Detection of structural variations in densely-labelled optical DNA barcodes: A hidden Markov model approach

Albertas Dvirnas, Callum L. Stewart, Vilhelm Müller et al
PLoS ONE. Vol. 16 (11 November)
Artikel i vetenskaplig tidskrift
2021

Does the scientific knowledge reflect the chemical diversity of environmental pollution? – A twenty-year perspective

Erik Kristiansson, Jessica Coria, Lina-Maria Gunnarsson et al
Environmental Science and Policy. Vol. 126, p. 90-98
Artikel i vetenskaplig tidskrift
2021

An updated phylogeny of the metallo-β-lactamases

Fanny Berglund, Anna Johnning, D. G.Joakim Larsson et al
Journal of Antimicrobial Chemotherapy. Vol. 76 (1), p. 117-123
Artikel i vetenskaplig tidskrift
2021

A framework for identifying the recent origins of mobile antibiotic resistance genes

Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
Communications Biology. Vol. 4 (1)
Artikel i vetenskaplig tidskrift
2021

Patient-Tailored Measurable Residual Disease Monitoring in Peripheral Blood Using Deep Sequencing and Droplet Digital PCR for Early Detection of Relapse in Childhood Acute Myeloid Leukemia: A NOPHO-DBH Collaborative Study

Anne-Sofie Skou, Kristian Lovvik Juul-Dam, Erik Delsing Malmberg et al
Blood. Vol. 138 (Supplement 1), p. 3457 -3459
Övrigt konferensbidrag
2021

SMAD4 haploinsufficiency in small intestinal neuroendocrine tumors

Tobias Hofving, Erik Elias, Anna Rehammar et al
BMC Cancer. Vol. 21 (1)
Artikel i vetenskaplig tidskrift
2020

MYO5B Mutations in Pheochromocytoma/Paraganglioma Promote Cancer Progression

F. Abel, T. Tesan Tomic, J. Olausson et al
Abstracts from the 52th Congress of the International Scoiety of Paediatric Oncology (SIOP). Vol. 67 (S4)
Paper i proceeding
2020

Discovery of Species-unique Peptide Biomarkers of Bacterial Pathogens by Tandem Mass Spectrometry-based Proteotyping

Roger Karlsson, Annika Thorsell, Margarita Gomila et al
Molecular and Cellular Proteomics. Vol. 19 (3), p. 518-528
Artikel i vetenskaplig tidskrift
2020

Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance genes

Fanny Berglund, Maria Elisabeth Böhm, Anton Martinsson et al
Microbial Genomics. Vol. 6 (11)
Artikel i vetenskaplig tidskrift
2020

Structural and biochemical characterization of the environmental MBLs MYO-1, ECV-1 and SHD-1

Christopher Fröhlich, Vidar Sørum, Sandra Huber et al
Journal of Antimicrobial Chemotherapy. Vol. 75 (9), p. 2554-2563
Artikel i vetenskaplig tidskrift
2020

Cultivation-Free Typing of Bacteria Using Optical DNA Mapping

Vilhelm Müller, My Nyblom, Anna Johnning et al
ACS Infectious Diseases. Vol. 6 (5), p. 1076-1084
Artikel i vetenskaplig tidskrift
2020

Predicting clinical resistance prevalence using sewage metagenomic data

Antti Karkman, Fanny Berglund, Carl-Fredrik Flach et al
Communications Biology. Vol. 3 (1)
Artikel i vetenskaplig tidskrift
2020

MYO5B mutations in pheochromocytoma/paraganglioma promote cancer progression

Tajana Tesan Tomic, Josefin Olausson, Anna Rehammar et al
PLoS Genetics. Vol. 16 (6), p. e1008803-
Artikel i vetenskaplig tidskrift
2020

When mycologists describe new species, not all relevant information is provided (clearly enough)

Louisa Durkin, Tobias Jansson, Marisol Sanchez et al
MycoKeys. Vol. 72, p. 109-128
Artikel i vetenskaplig tidskrift
2020

A comprehensive survey of integron-associated genes present in metagenomes

Mariana Buongermino Pereira, Tobias Österlund, Martin Eriksson et al
BMC Genomics. Vol. 21 (1)
Artikel i vetenskaplig tidskrift
2020

The Association between Insertion Sequences and Antibiotic Resistance Genes

Mohammad Razavi, Erik Kristiansson, Carl-Fredrik Flach et al
mSphere. Vol. 5 (5)
Artikel i vetenskaplig tidskrift
2020

Triclosan changes community composition and selects for specific bacterial taxa in marine periphyton biofilms in low nanomolar concentrations

Martin Eriksson, Sanli Kemal, Nilsson Rickard Henrik et al
Ecotoxicology. Vol. 29 (7), p. 1083-1094
Artikel i vetenskaplig tidskrift
2020

Long-term application of Swedish sewage sludge on farmland does not cause clear changes in the soil bacterial resistome

Carolin Rutgersson, Stefan Ebmeyer, Simon Bo Lassen et al
Environment International. Vol. 137
Artikel i vetenskaplig tidskrift
2020

Phosphorylated CtIP bridges DNA to promote annealing of broken ends

Robin Öz, Sean Howard, Rajhans Sharma et al
Proceedings of the National Academy of Sciences of the United States of America. Vol. 117 (35), p. 21403-21412
Artikel i vetenskaplig tidskrift
2019

Pharmacology beyond the patient – The environmental risks of human drugs

Lina-Maria Gunnarsson, Jason R. Snape, Bas Verbruggen et al
Environment International. Vol. 129, p. 320-332
Artikel i vetenskaplig tidskrift
2019

Modelling of zero-inflation improves inference of metagenomic gene count data

Viktor Jonsson, Tobias Österlund, Olle Nerman et al
Statistical Methods in Medical Research. Vol. 28 (12), p. 3712-3728
Artikel i vetenskaplig tidskrift
2019

mRNA Expression and Biomarker Responses in Perch at a Biomonitoring Site in the Baltic Sea - Possible Influence of Natural Brominated Chemicals

Lars Forlin, Noomi Asker, Mats Topel et al
Frontiers in Marine Science. Vol. 6 (APR)
Artikel i vetenskaplig tidskrift
2019

Identification and reconstruction of novel antibiotic resistance genes from metagenomes

Fanny Berglund, Tobias Österlund, Fredrik Boulund et al
Microbiome. Vol. 7 (1)
Artikel i vetenskaplig tidskrift
2019

Sewage from Airplanes Exhibits High Abundance and Diversity of Antibiotic Resistance Genes

Stefanie Heß, David Kneis, Tobias Österlund et al
Environmental Science & Technology. Vol. 53 (23), p. 13898-13905
Artikel i vetenskaplig tidskrift
2019

PER extended-spectrum β-lactamases originate from Pararheinheimera spp

Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
International Journal of Antimicrobial Agents. Vol. 53 (2), p. 158-164
Artikel i vetenskaplig tidskrift
2019

Bacterial identification by optical mapping of genomic DNA in nanofluidic channels

My Nyblom, Vilhelm Müller, Anna Johnning et al
23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2019, p. 821-822
Paper i proceeding
2019

The mobile FOX AmpC beta-lactamases originated in Aeromonas allosaccharophila

Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
International Journal of Antimicrobial Agents. Vol. 54 (6), p. 798-802
Artikel i vetenskaplig tidskrift
2019

Accurate and Sensitive Analysis of Minimal Residual Disease in Acute Myeloid Leukemia Using Deep Sequencing of Single Nucleotide Variations

Erik Delsing Malmberg, Anna Rehammar, Mariana Buongermino Pereira et al
Journal of Molecular Diagnostics. Vol. 21 (1), p. 149-162
Artikel i vetenskaplig tidskrift
2019

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Peter Brown, Yaoqi Zhou, Aik-Choon Tan et al
Database : the journal of biological databases and curation. Vol. 2019, p. 1-67
Artikel i vetenskaplig tidskrift
2019

177 Lu-octreotate therapy for neuroendocrine tumours is enhanced by Hsp90 inhibition

Tobias Hofving, Viktor Sandblom, Yvonne Arvidsson et al
Endocrine-Related Cancer. Vol. 26 (4), p. 437-449
Artikel i vetenskaplig tidskrift
2019

Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes

Nachiket Marathe, Fanny Berglund, Mohammad Razavi et al
Microbiome. Vol. 7 (1)
Artikel i vetenskaplig tidskrift
2019

CMY-1/MOX-family AmpC β-lactamases MOX-1, MOX-2 and MOX-9 were mobilized independently from three Aeromonas species

Stefan Ebmeyer, Erik Kristiansson, D. G. Joakim Larsson
Journal of Antimicrobial Chemotherapy. Vol. 74 (5), p. 1202-1206
Artikel i vetenskaplig tidskrift
2019

Introducing ribosomal tandem repeat barcoding for fungi

Christian Wurzbacher, Ellen Larsson, Johan Bengtsson-Palme et al
Molecular Ecology Resources. Vol. 19 (1), p. 118-127
Artikel i vetenskaplig tidskrift
2018

Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction approach

Albertas Dvirnas, C. Pichler, Callum L. Stewart et al
PLoS ONE. Vol. 13 (3)
Artikel i vetenskaplig tidskrift
2018

ECOdrug: A database connecting drugs and conservation of their targets across species

Bas Verbruggen, Lina-Maria Gunnarsson, Erik Kristiansson et al
Nucleic Acids Research. Vol. 46 (D1), p. D930-D936
Artikel i vetenskaplig tidskrift
2018

The resistomes of six carbapenem-resistant pathogens - a critical genotype-phenotype analysis

Anna Johnning, N. Karami, Erika Tång Hallbäck et al
Microbial Genomics. Vol. 4 (11)
Artikel i vetenskaplig tidskrift
2018

The neuroendocrine phenotype, genomic profile and therapeutic sensitivity of GEPNET cell lines

Tobias Hofving, Yvonne Arvidsson, Bilal Almobarak et al
Endocrine-Related Cancer. Vol. 25 (3), p. 367-380
Artikel i vetenskaplig tidskrift
2018

Computational and Statistical Considerations in the Analysis of Metagenomic Data

Fredrik Boulund, Mariana Buongermino Pereira, Viktor Jonsson et al
Metagenomics: Perspectives, Methods, and Applications, p. 81-102
Kapitel i bok
2018

Functional metagenomics reveals a novel carbapenem-hydrolyzing mobile beta-lactamase from Indian river sediments contaminated with antibiotic production waste

Nachiket Marathe, Anders Janzon, S. Kotsakis et al
Environment International. Vol. 112 (!), p. 279-286
Artikel i vetenskaplig tidskrift
2018

Environmental factors influencing the development and spread of antibiotic resistance

Johan Bengtsson-Palme, Erik Kristiansson, D. G. Joakim Larsson
FEMS Microbiology Reviews. Vol. 42 (1), p. 68-80
Reviewartikel
2018

Comparison of normalization methods for the analysis of metagenomic gene abundance data

Mariana Buongermino Pereira, Mikael Wallroth, Viktor Jonsson et al
BMC Genomics. Vol. 19 (1)
Artikel i vetenskaplig tidskrift
2018

Selective concentration for ciprofloxacin resistance in Escherichia coli grown in complex aquatic bacterial biofilms

Nadine Kraupner, Stefan Ebmeyer, Johan Bengtsson-Palme et al
Environment International. Vol. 116, p. 255-268
Artikel i vetenskaplig tidskrift
2018

miRNA profiling of small intestinal neuroendocrine tumors defines novel molecular subtypes and identifies miR-375 as a biomarker of patient survival

Yvonne Arvidsson, Anna Rehammar, Anders Bergström et al
Modern Pathology. Vol. 31 (8), p. 1302-1317
Artikel i vetenskaplig tidskrift
2017

Comparison of four DNA extraction methods for comprehensive assessment of 16S rRNA bacterial diversity in marine biofilms using high-throughput sequencing

Natàlia Corcoll, Tobias Österlund, Lucas Sinclair et al
FEMS Microbiology Letters. Vol. 364 (14)
Artikel i vetenskaplig tidskrift
2017

HirBin: High-resolution identification of differentially abundant functions in metagenomes

Tobias Österlund, Viktor Jonsson, Erik Kristiansson
BMC Genomics. Vol. 18 (1)
Artikel i vetenskaplig tidskrift
2017

Draft Genome Sequences of Six Strains of Streptococcus pneumoniae from Serotypes 5, 6A, 6B, 18C, 19A, and 23F

Hedvig E. Jakobsson, Francisco Salvà-Serra, Kaisa Thorell et al
Genome Announcements. Vol. 5 (14)
Artikel i vetenskaplig tidskrift
2017

Integrative analysis of omics data

Tobias Österlund, Marija Cvijovic, Erik Kristiansson
Systems Biology, p. 1-24
Kapitel i bok
2017

Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data sets

Fredrik Boulund, Fanny Berglund, Carl-Fredrik Flach et al
BMC Genomics. Vol. 18 (1), p. Art 682-
Artikel i vetenskaplig tidskrift
2017

Using metagenomics to investigate human and environmental resistomes

Johan Bengtsson-Palme, D. G. Joakim Larsson, Erik Kristiansson
Journal of Antimicrobial Chemotherapy. Vol. 72 (10), p. 2690-2703
Artikel i vetenskaplig tidskrift
2017

Identification of 76 novel B1 metallo-beta-lactamases through large-scale screening of genomic and metagenomic data

Fanny Berglund, Nachiket Marathe, Tobias Österlund et al
Microbiome. Vol. 5 (1), p. 134-134
Artikel i vetenskaplig tidskrift
2017

Does antifouling paint select for antibiotic resistance?

Carl-Fredrik Flach, C. Pal, Carl Johan Svensson et al
Science of the Total Environment. Vol. 590-591, p. 461-468
Artikel i vetenskaplig tidskrift
2017

Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics

Fredrik Boulund, R. Karlsson, L. Gonzales-Siles et al
Molecular and Cellular Proteomics. Vol. 16 (6), p. 1052-1063
Artikel i vetenskaplig tidskrift
2017

Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory

R. Henrik Nilsson, Marisol Sánchez-García, M. Ryberg et al
MycoKeys. Vol. 26, p. 13-24
Artikel i vetenskaplig tidskrift
2017

Untreated urban waste contaminates Indian river sediments with resistance genes to last resort antibiotics

Nachiket Marathe, C. Pal, Swapnil S. Gaikwad et al
Water Research. Vol. 124, p. 388-397
Artikel i vetenskaplig tidskrift
2017

Discovery of the fourth mobile sulfonamide resistance gene

M. Razavi, Nachiket Marathe, M. R. Gillings et al
Microbiome. Vol. 5 (1), p. 160-160
Artikel i vetenskaplig tidskrift
2017

Variability in Metagenomic Count Data and Its Influence on the Identification of Differentially Abundant Genes.

Viktor Jonsson, Tobias Österlund, Olle Nerman et al
Journal of Computational Biology. Vol. 24 (4), p. 311-326
Artikel i vetenskaplig tidskrift
2017

Patient-tailored analysis of minimal residual disease in acute myeloid leukemia using next generation sequencing.

Erik Br Malmberg, Sara Ståhlman, Anna Rehammar et al
European Journal of Haematology. Vol. 98 (1), p. 26-37
Artikel i vetenskaplig tidskrift
2016

Elucidating selection processes for antibiotic resistance in sewage treatment plants using metagenomics

Johan Bengtsson-Palme, Rickard Hammarén, C. Pal et al
Science of the Total Environment. Vol. 572, p. 697-712
Artikel i vetenskaplig tidskrift
2016

Top 50 most wanted fungi

R. Henrik Nilsson, Christian Wurzbacher, Mohammad Bahram et al
MycoKeys. Vol. 12, p. 29-40
Artikel i vetenskaplig tidskrift
2016

Statistical evaluation of methods for identification of differentially abundant genes in comparative metagenomics

Viktor Jonsson, Tobias Österlund, Olle Nerman et al
BMC Genomics. Vol. 17 (1)
Artikel i vetenskaplig tidskrift
2016

Draft Genome Sequence of Streptococcus gordonii Type Strain CCUG 33482T.

Francisco Salvà-Serra, Hedvig E Jakobsson, Kaisa Thorell et al
Genome Announcements. Vol. 4 (2)
Artikel i vetenskaplig tidskrift
2016

Draft genome sequence of extended-spectrum-β-lactamase-producing Escherichia coli strain CCUG 62462, isolated from a urine sample

Anna Johnning, Hedvig E Jakobsson, Fredrik Boulund et al
Genome Announcements. Vol. 4 (6), p. e01382-16
Artikel i vetenskaplig tidskrift
2016

Proteotyping of Streptococcus pneumoniae, using tandem mass spectrometry for identification of biomarkers for species and strain differentiation

Hedvig E Jakobsson, Lucia Gonzales-Siles, Roger Karlsson et al
11th International Meeting on Microbial Epidemiological Markers (IMMEM XI) 9 - 12 March 2016, Estoril, Portugal
Övrigt konferensbidrag
2016

Draft Genome Sequence of Moraxella catarrhalis Type Strain CCUG 353T.

Hedvig E Jakobsson, Francisco Salvà-Serra, Kaisa Thorell et al
Genome Announcements. Vol. 4 (3)
Artikel i vetenskaplig tidskrift
2016

Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping.

Vilhelm Müller, Fredrika Rajer, Karolin Frykholm et al
Scientific Reports. Vol. 6, p. 37938-
Artikel i vetenskaplig tidskrift
2016

Expression profiling of small intestinal neuroendocrine tumors identifies subgroups with clinical relevance, prognostic markers and therapeutic targets.

Ellinor Andersson, Yvonne Arvidsson, Christina Swärd et al
Modern Pathology. Vol. 29 (6), p. 616-629
Artikel i vetenskaplig tidskrift
2016

Biomarker responses in eelpouts from four coastal areas in Sweden, Denmark and Germany

Noomi Asker, Eva Albertsson, Emma Wijkmark et al
Marine Environmental Research. Vol. 120, p. 32-43
Artikel i vetenskaplig tidskrift
2016

Malignant pheochromocytomas/paragangliomas harbor mutations in transport and cell adhesion genes.

Annica Wilzén, Anna Rehammar, Andreas Muth et al
International Journal of Cancer. Vol. 138 (9), p. 2201-11
Artikel i vetenskaplig tidskrift
2016

Detailed characterization of plasmids carrying resistance genes using optical DNA mapping

Vilhelm Müller, Lena Nyberg, Mahmood Saair Quaderi et al
20th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2016, p. 1561-1562
Paper i proceeding
2016

New Ph.D. students in the empirical sciences should be recruited into ongoing scientific studies right from the start

Martin Ryberg, Erik Kristiansson, Christian Wurzbacher et al
Journal of Brief Ideas
Artikel i övrig tidskrift
2016

Proteotyping: Tandem Mass Spectrometry Shotgun Proteomic Characterization and Typing of Pathogenic Microorganisms

Roger Karlsson, Lucia Gonzales-Siles, Fredrik Boulund et al
MALDI‐TOF and Tandem MS for Clinical Microbiology, p. 419-450
Kapitel i bok
2016

Rapid identification of intact bacterial resistance plasmids via optical mapping of single DNA molecules

Lena Nyberg, Mahmood Saair Quaderi, Gustav Emilsson et al
Scientific Reports. Vol. 6
Artikel i vetenskaplig tidskrift
2016

The structure and diversity of human, animal and environmental resistomes

C. Pal, Johan Bengtsson-Palme, Erik Kristiansson et al
Microbiome. Vol. 4, p. artikel nr 54-
Artikel i vetenskaplig tidskrift
2016

HattCI: Fast and Accurate attC site Identification Using Hidden Markov Models.

Mariana Buongermino Pereira, Mikael Wallroth, Erik Kristiansson et al
Journal of Computational Biology. Vol. 23 (11), p. 891-902
Artikel i vetenskaplig tidskrift
2015

The human gut microbiome as a transporter of antibiotic resistance genes between continents

Johan Bengtsson-Palme, Martin Angelin, M. Huss et al
Antimicrobial Agents and Chemotherapy. Vol. 59 (10), p. 6551-6560
Artikel i vetenskaplig tidskrift
2015

A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts

R. Henrik Nilsson, Leho Tedersoo, Martin Ryberg et al
Microbes and Environments. Vol. 30 (2), p. 145-150
Artikel i vetenskaplig tidskrift
2015

Quinolone resistance mutations in the faecal microbiota of Swedish travellers to India

Anna Johnning, Erik Kristiansson, Martin Angelin et al
BMC Microbiology. Vol. 15 (1)
Artikel i vetenskaplig tidskrift
2015

Metagenomic Sequencing of Marine Periphyton: Taxonomic and Functional Insights into Biofilm Communities

Kemal Sanli, Johan Bengtsson-Palme, R. Henrik Nilsson et al
Frontiers in Microbiology. Vol. 6 (1192)
Artikel i vetenskaplig tidskrift
2015

Proteotyping: Proteomic characterization, classification and identification of microorganisms--A prospectus

Roger Karlsson, Lucia Gonzales-Siles, Fredrik Boulund et al
Systematic and Applied Microbiology. Vol. 38 (4), p. 246-257
Reviewartikel
2015

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential

C. Pal, Johan Bengtsson-Palme, Erik Kristiansson et al
BMC Genomics. Vol. 16 (1), p. 964-
Artikel i vetenskaplig tidskrift
2015

Isolation of novel IncA/C and IncN fluoroquinolone resistance plasmids from an antibiotic-polluted lake

Carl-Fredrik Flach, Anna Johnning, Ida Nilsson et al
Journal of Antimicrobial Chemotherapy. Vol. 70 (10), p. 2709-2717
Artikel i vetenskaplig tidskrift
2015

Tentacle: distributed quantification of genes in metagenomes

Fredrik Boulund, Anders Sjögren, Erik Kristiansson
GigaScience. Vol. 4 (1), p. artikel nr 40-
Artikel i vetenskaplig tidskrift
2015

Patient-Tailored Analysis of Minimal Residual Disease in Acute Myeloid Leukemia Using Next Generation Sequencing

Erik Malmberg, Sara Ståhlman, Anna Rehammar et al
Blood. Vol. 126 (23), p. 3841-
Övrigt konferensbidrag
2015

Waterborne beclomethasone dipropionate affects the physiology of fish while its metabolite beclomethasone is not taken up

Bethanie Carney Almroth, Lina-Maria Gunnarsson, Filip Cuklev et al
Science of the Total Environment. Vol. 511, p. 37-46
Artikel i vetenskaplig tidskrift
2015

Resistance Mutations in gyrA and parC are Common in Escherichia Communities of both Fluoroquinolone-Polluted and Uncontaminated Aquatic Environments

Anna Johnning, Erik Kristiansson, Jerker Fick et al
Frontiers in Microbiology. Vol. 6 (DEC), p. 1355-
Artikel i vetenskaplig tidskrift
2015

Optical mapping of single DNA molecules in nanochannels: A novel method for identification and characterization of antibiotic resistance

Lena Nyberg, Gustav Emilsson, A. Nilsson et al
18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014, p. 1045-1047
Paper i proceeding
2014

Assessing variation in the potential susceptibility of fish to pharmaceuticals, considering evolutionary differences in their physiology and ecology

A. R. Brown, Lina-Maria Gunnarsson, Erik Kristiansson et al
Philosophical Transactions of the Royal Society B: Biological Sciences. Vol. 369 (1656), p. Art. no. 20130576-
Artikel i vetenskaplig tidskrift
2014

Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India

Johan Bengtsson-Palme, Fredrik Boulund, Jerker Fick et al
Frontiers in Microbiology. Vol. 5 (648)
Artikel i vetenskaplig tidskrift
2014

Genetic Copy Number Variations in Colon Mucosa Indicating Risk for Colorectal Cancer.

Annika Gustafsson Asting, Kristina Lagerstedt, Erik Kristiansson et al
Journal of Cancer Therapy. Vol. 5 (14)
Artikel i vetenskaplig tidskrift
2014

BacMet: antibacterial biocide and metal resistance genes database

C. Pal, Johan Bengtsson-Palme, Christopher Rensing et al
Nucleic Acids Research. Vol. 42 (D1), p. D737-D743
Artikel i vetenskaplig tidskrift
2014

Fluoroquinolones and qnr genes in sediment, well water, soil and human fecal flora in an Indian environment polluted by drug manufacturing

Carolin Rutgersson, Jerker Fick, Nachiket Marathe et al
Environmental Science & Technology. Vol. 48 (14), p. 7825−7832-7832
Artikel i vetenskaplig tidskrift
2013

ERBB3 is a marker of a ganglioneuroblastoma/ganglioneuroma-like expression profile in neuroblastic tumours.

Annica Wilzén, Cecilia Krona, Baldur Sveinbjörnsson et al
Molecular Cancer. Vol. 12 (July 2013), p. artikel nr 70-
Artikel i vetenskaplig tidskrift
2013

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

Johan Bengtsson-Palme, Martin Ryberg, Martin Hartmann et al
Methods in Ecology and Evolution. Vol. 4 (10), p. 914-919
Artikel i vetenskaplig tidskrift
2013

Oral exposure to industrial effluent with exceptionally high levels of drugs does not indicate acute toxic effects in rats

Carolin Rutgersson, Lina-Maria Gunnarsson, J. Fick et al
Environmental Toxicology and Chemistry. Vol. 32 (3), p. 577-584
Artikel i vetenskaplig tidskrift
2013

Acquired genetic mechanisms of a multiresistant bacterium isolated from a treatment plant receiving wastewater from antibiotic production.

Anna Johnning, Edward R.B. Moore, Liselott Svensson-Stadler et al
Applied and Environmental Microbiology. Vol. 79 (23), p. 7256-63
Artikel i vetenskaplig tidskrift
2013

High levels of quinolone resistance genes found near a waste water treatment plant serving antibiotic manufacturers

Carolin Rutgersson, Carl-Fredrik Flach, Nachiket Marathe et al
52nd International Conference on Antimicrobial Agents and Chemotherapy (ICAAC), 9-12 September 2012, San Francisco (C1-665)
Poster (konferens)
2013

Expression of the glucocorticoid receptor is decreased in experimental Staphylococcus aureus sepsis.

Maria Bergquist, Merja Nurkkala, Christian Rylander et al
Journal of Infection. Vol. 67 (6), p. 574-583
Artikel i vetenskaplig tidskrift
2013

Gastrointestinal stromal tumors (GISTs) express somatostatin receptors and bind radiolabeled somatostatin analogs.

Gabriella Arne, Bengt E Nilsson, Johanna Dalmo et al
Acta Oncologica. Vol. 52 (4), p. 783-792
Artikel i vetenskaplig tidskrift
2013

Hepatic transcriptome profiling indicates differential mRNA expression of apoptosis and immune related genes in eelpout (Zoarces viviparus) caught at Göteborg harbor, Sweden

Noomi Asker, Erik Kristiansson, Eva Albertsson et al
Aquatic Toxicology. Vol. 130-131, p. 58-67
Artikel i vetenskaplig tidskrift
2013

Incorporating molecular data in fungal systematics: a guide for aspiring researchers

Kevin D. Hyde, Dhanushka Udayanga, Dimuthu S. Manamgoda et al
Current Research in Environmental and Applied Mycology. Vol. 3 (1), p. artikel nr 1-
Artikel i vetenskaplig tidskrift
2013

Functional verification of computationally predicted qnr genes

Carl-Fredrik Flach, Fredrik Boulund, Erik Kristiansson et al
Annals of Clinical Microbiology and Antimicrobials. Vol. 12 (1), p. artikel nr 34-
Artikel i vetenskaplig tidskrift
2013

A novel method for cross-species gene expression analysis

Erik Kristiansson, Tobias Österlund, Lina-Maria Gunnarsson et al
BMC Bioinformatics. Vol. 14 (1), p. artikel nr 70-
Artikel i vetenskaplig tidskrift
2012

Does ketoprofen or diclofenac pose the lowest risk to fish?

Filip Cuklev, J. Fick, Marija Cvijovic et al
Journal of Hazardous Materials. Vol. 229-230, p. 100-106
Artikel i vetenskaplig tidskrift
2012

A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences

Fredrik Boulund, Anna Johnning, Mariana Buongermino Pereira et al
BMC Genomics. Vol. 13 (1), p. 695-
Artikel i vetenskaplig tidskrift
2012

Estradiol ameliorates arthritis and protects against systemic bone loss in Staphylococcus aureus infection in mice

Inger Gjertsson, Erik Kristiansson, Jerker Fick et al
Arthritis Research & Therapy. Vol. 14 (2), p. artikel nr R76-
Artikel i vetenskaplig tidskrift
2012

Comprehensive Analysis of Antibiotic Resistance Genes Using Metagenomic DNA Sequencing: Studies of Contaminated River Sediment, Well Water and Soil Microbial Communities

Johan Bengtsson, Fredrik Boulund, Jerker Fick et al
ISME14 Conference, Copenhagen, Denmark, 2012-08-20
Poster (konferens)
2012

Comprehensive Analysis of Antibiotic Resistance Genes Using Metagenomic DNA Sequencing: Studies of Contaminated River Sediment, Well Water and Soil Microbial Communities

Johan Bengtsson, Fredrik Boulund, Jerker Fick et al
SocBiN Bioinformatics Conference 2012, Stockholm, Sweden, 2012-06-11
Poster (konferens)
2012

Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences

R. Henrik Nilsson, Leho Tedersoo, Kessy Abarenkov et al
MycoKeys. Vol. 4, p. 37-63
Artikel i vetenskaplig tidskrift
2012

Global hepatic gene expression in rainbow trout exposed to sewage effluents: A comparison of different sewage treatment technologies

Filip Cuklev, Lina-Maria Gunnarsson, Marija Cvijovic et al
Science of the Total Environment. Vol. 427-428, p. 106-114
Artikel i vetenskaplig tidskrift
2011

Antibiotika i miljön tros öka risken för spridning av resistensgener mellan arter.

D. G. Joakim Larsson, Erik Kristiansson
Läkartidningen, Nya Rön (12)
Artikel i övrig tidskrift
2011

Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance and Gene Transfer Elements

Erik Kristiansson, J. Fick, Anders Janzon et al
PLoS ONE. Vol. 6 (2)
Artikel i vetenskaplig tidskrift
2011

The genome of an extensively drug-resistant bacterium isolated from a wastewater treatment plant receiving effluent from antibiotic manufacturing

Anna Johnning, Erik Kristiansson, Y. Shouche et al
SETAC Europe 21st Annual Meeting; Ecosystem Protection in a Sustainable World: A challenge for Science and Regulation 15-19 May 2011, p. 212-
Poster (konferens)
2011

Environmental Comparative Pharmacology: Theory and application

Lina-Maria Gunnarsson, Duane Huggett, Erik Kristiansson et al
Human Pharmaceuticals in the Environment - Current and Future Perspectives. Eds. Brooks B, Huggett D., p. 85-108
Kapitel i bok
2011

Diclofenac in fish: Blood plasma levels similar to human therapeutic levels affect global hepatic gene expression.

Filip Cuklev, Erik Kristiansson, Jerker Fick et al
Environmental toxicology and chemistry / SETAC. Vol. 30 (9), p. 2126-34
Artikel i vetenskaplig tidskrift
2011

Exploring the metagenomes of environmental antibiotic hotspots to identify resistance factors that we may face in the clinic tomorrow

D. G. Joakim Larsson, Anders Janzon, Anna Johnning et al
SETAC Europe 21st Annual Meeting; Ecosystem Protection in a Sustainable World: A challenge for Science and Regulation 15-19 May 2011, p. 38-
Poster (konferens)
2011

Environmental microbial communities living under very high antibiotic selection pressure

Anders Janzon, Erik Kristiansson, D. G. Joakim Larsson
Antimicrobial Resistance in the Environment. Eds. Keen P. , Montforts MH, (in press. Dec 2011), p. 483-501
Kapitel i bok
2011

Physiology and mRNA expression in rainbow trout (Oncorhynchus mykiss) after long-term exposure to the new antifoulant medetomidine.

Anna Lennquist, Noomi Asker, Erik Kristiansson et al
Comparative Biochemistry and Physiology, Part C. Vol. 154 (3), p. 234-41
Artikel i vetenskaplig tidskrift
2011

Expression profiling of GIST: CD133 is associated with KIT exon 11 mutations, gastric location, and poor prognosis.

Gabriella Arne, Erik Kristiansson, Olle Nerman et al
International Journal of Cancer. Vol. 129 (5), p. 1149-1161
Artikel i vetenskaplig tidskrift
2010

Antibiotic-contaminated effluent promotes mobile resistance in environmental baceria

Erik Kristiansson, J Fick, Anders Janzon et al
35th Congress of the Federation of European Biochemial Societies (FEBS), Gothenburg, June 26 - July 1, 2010.. Vol. 277 (Suppl 1), p. 105-
Poster (konferens)
2010

Genes with relevance for early to late progression of colon carcinoma based on combined genomic and transcriptomic information from the same patients.

Kristina Lagerstedt, Erik Kristiansson, Christina Lönnroth et al
Cancer Informatics. Vol. 9, p. 79-91
Artikel i vetenskaplig tidskrift
2010

Whole genome sequencing of a multiresistant bacterium isolated from a wastewater treatment plant receiving effluent from antibiotic drug manufactureing

Anna Johnning, Erik Kristiansson, Y.S Shouche et al
35th Congress of the Federation of European Biochemical Societies (FEBS), Gothenburg, June 26 - July 1, 2010. Vol. 277 (Suppl 1), p. 105-
Poster (konferens)
2010

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

R. Henrik Nilsson, Vilmar Veldre, Martin Hartmann et al
Fungal Ecology. Vol. 3 (4), p. 284-287
Artikel i vetenskaplig tidskrift
2010

Hypoxia stimulates CXCR4 signalling in ileal carcinoids.

Yvonne Arvidsson, Anders Bergström, Linda Arvidsson et al
Endocrine-related cancer. Vol. 17 (2), p. 303-316
Artikel i vetenskaplig tidskrift
2010

Exploring the microbial resistome in river sediments exposed to extraordinary high levels of antibiotics

Anders Janzon, Carolin Rutgersson, Erik Kristiansson et al
35th FEBS Congress: Molecules of Life
Poster (konferens)
2010

Colour and melanophore function in rainbow trout after long term exposure to the new antifoulant medetomidine

Anna Lennquist, Lena Mårtensson Lindblad, Daniel Hedberg et al
Chemosphere. Vol. 80 (9), p. 1050-1055
Artikel i vetenskaplig tidskrift
2010

An open source chimera checker for the fungal ITS region

R. Henrik Nilsson, Kessy Abarenkov, Vilmar Veldre et al
Molecular Ecology Resources. Vol. 10 (6), p. 1076-1081
Artikel i vetenskaplig tidskrift
2010

Environmental biomonitoring of Zoarces viviparus in combination with large scale gene expression profiling

Noomi Asker, Erik Kristiansson, D. G. Joakim Larsson
27th Congress of the European Society of Comparative Biochemistry and Physiology, Alessandria, Italy. Sept 5-9, 2010. Vol. 157 (Suppl 1), p. S6-S7
Poster (konferens)
2010

An open source chimera checker for the fungal ITS region

R. Henrik Nilsson, Vilmar Veldre, Kessy Abarenkov et al
9th International Mycological Congress, Edinburgh, UK
Poster (konferens)
2009

Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing

Erik Kristiansson, Noomi Asker, Lars Förlin et al
BMC Genomics. Vol. 10 (345)
Artikel i vetenskaplig tidskrift
2009

Multi-endpoint studies on the eelpout (Zoarces viviparus), using gene expression oligonucleotide microarray

Noomi Asker, Erik Kristiansson, D. G. Joakim Larsson et al
PRIMO 15th International Symposium Abstract Book, Bordeaux, May 17-20, 2009
Paper i proceeding
2009

An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity

Martin Ryberg, Erik Kristiansson, Elisabet Sjökvist et al
New Phytologist. Vol. 181 (2), p. 471-477
Artikel i vetenskaplig tidskrift
2009

Multi-endpoint studies on the eelpout (Zoarces viviparus), using gene expression oligonucleotide microarray

Noomi Asker, Erik Kristiansson, D. G. Joakim Larsson et al
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009, p. 150-
Paper i proceeding
2009

Establishing the barnacle Balanus improvisus as a potent invertebrate monitoring system in marine ecotoxicogenomics

Anders Blomberg, Susanna Falkbring, Magnus Alm Rosenblad et al
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009, p. 111-
Poster (konferens)
2009

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies

R. Henrik Nilsson, Martin Ryberg, Kessy Abarenkov et al
FEMS Microbiology Letters. Vol. 296 (1), p. 97-101
Artikel i vetenskaplig tidskrift
2009

Predicting functional upstream open reading frames in Saccharomyces cerevisiae

Selpi Selpi, Christopher H. Bryant, Graham Kemp et al
BMC Bioinformatics. Vol. 10, p. 451-
Artikel i vetenskaplig tidskrift
2009

Release of fluoroquinolones and other active pharmaceutical ingredients from Indian bulk drug manufacture – environmental fate and effects on antibiotic resistance development, microbial ecosystems and aquatic vertebrates. Invited platform presentation.

D. G. Joakim Larsson, J Fick, Yougesh Schouche et al
The Annual meeting of the Society for General Microbiology, March 30-April 2, Harrogate, UK, p. 5 (HAR03)-
Paper i proceeding
2009

Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing.

Erik Kristiansson, Noomi Asker, Lars Förlin et al
Swedish Bioinformatics Workshop Abstract book, Umeå, March 12-13, 2009
Paper i proceeding
2009

Pharmaceutical Industry Effluent Diluted 1:500 Affects Global Gene Expression, Cytochrome P4501A Activity and Plasma Phosphate in Fish.

Lina-Maria Gunnarsson, Erik Kristiansson, Carolin Rutgersson et al
Environmental Toxicology and Chemistry. Vol. 28 (12), p. 2639-2647
Artikel i vetenskaplig tidskrift
2009

Evolutionary Forces Act on Promoter Length: Identification of Enriched Cis-Regulatory Elements

Erik Kristiansson, Michael Thorsen, Markus J. Tamás et al
Molecular Biology and Evolution. Vol. 26 (6), p. 1299-1307
Artikel i vetenskaplig tidskrift
2009

Genetic basis of arsenite and cadmium tolerance in Saccharomyces cerevisiae.

Michael Thorsen, Gabriel G Perrone, Erik Kristiansson et al
BMC Genomics. Vol. 10, p. 105-
Artikel i vetenskaplig tidskrift
2009

A software pipeline for processing and identification of fungal ITS sequences

R. Henrik Nilsson, Gunilla Bok, Martin Ryberg et al
Source Code for Biology and Medicine. Vol. 4 (1)
Artikel i vetenskaplig tidskrift
2009

Pharmaceutical industry effluent diluted 1:500 affects global hepatic gene expression, CYP1A activity and plasma phosphate in fish

Lina-Maria Gunnarsson, Erik Kristiansson, Carolin Rutgersson et al
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009
Paper i proceeding
2009

Large-scale gene expression analysis in non-model organisms – de novo transcriptome sequencing and microarray design.

Erik Kristiansson, Noomi Asker, Lars Förlin et al
Swedish Bioinformatics Workshop Abstract book, Umeå, March 12-13, 2009
Paper i proceeding
2009

Dose-response effects on global hepatic gene expression in rainbow trout exposed to diclofenac

Filip Cuklev, Erik Kristiansson, Jerker Fick et al
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009, p. 154-
Paper i proceeding
2009

Short-term oral exposure to effluent from bulk drug industries does not indicate acute toxic effects in rat

Carolin Rutgersson, Lina-Maria Gunnarsson, Erik Kristiansson et al
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009, p. 255-
Paper i proceeding
2009

Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing

Erik Kristiansson, Noomi Asker, Lars Förlin et al
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009, p. 119-
Paper i proceeding
2009

ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes

Erik Kristiansson, Philip Hugenholtz, Daniel Dalevi
Bioinformatics. Vol. 25 (20), p. 2737-2738
Artikel i vetenskaplig tidskrift
2009

Monitoring of the viviparous fish species eelpout (Zoarces viviparus) indicates environmental changes in coastal waters.

Lars Förlin, Joachim Sturve, Jari Parkkonen et al
19th Annual Meeting of SETAC Europe, SETAC 2009 Göteborg, May 31- June 4, 2009
Paper i proceeding
2009

Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing

Noomi Asker, Erik Kristiansson, Lars Förlin et al
PRIMO 15th International Symposium Abstract Book, Bordeaux, May 17-20, 2009
Paper i proceeding
2009

identification of novel biomarkers - a framework for cross-species gene expression analysis

Tobias Österlund, Lina-Maria Gunnarsson, D. G. Joakim Larsson et al
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009, p. 118-
Paper i proceeding
2008

Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota)

Martin Ryberg, R. Henrik Nilsson, Erik Kristiansson et al
BMC Evolutionary Biology. Vol. 8 (50)
Artikel i vetenskaplig tidskrift
2008

Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification

R. Henrik Nilsson, Erik Kristiansson, Martin Ryberg et al
Evolutionary Bioinformatics. Vol. 2008 (4), p. 193-201
Artikel i vetenskaplig tidskrift
2008

Evolutionary conservation of human drug targets in organisms used for environmental risk assessments.

Lina-Maria Gunnarsson, Alexandra Jauhiainen, Erik Kristiansson et al
Environmental Science & Technology. Vol. 42 (15), p. 5807-13
Artikel i vetenskaplig tidskrift
2008

Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing

Erik Kristiansson, Noomi Asker, Lars Förlin et al
The 9th International Conference on System Biology (ICSB) abstract book, Göteborg, August 22-28, 2008
Paper i proceeding
2007

Weighted Analysis of General Microarray Experiments

Anders Sjögren, Erik Kristiansson, Mats Rudemo et al
BMC Bioinformatics. Vol. 8, p. 15-
Artikel i vetenskaplig tidskrift
2007

Statistical analysis of gene expression data

Erik Kristiansson
Doktorsavhandling
2007

Quantitative transcriptome, proteome and sulfur metabolite profiling of the Saccharomyces cerevisiae response to arsenite

Michael Thorsen, Gilles Lagniel, Erik Kristiansson et al
Physiological Genomics. Vol. 30, p. 35-43
Artikel i vetenskaplig tidskrift
2007

Sensitive and robust gene expression changes in fish exposed to estrogen – a microarray approach

Lina-Maria Gunnarsson, Erik Kristiansson, Lars Förlin et al
BMC Genomics. Vol. 8 (149)
Artikel i vetenskaplig tidskrift
2007

Weighted Analysis of General Microarray Experiments

Anders Sjögren, Erik Kristiansson, Mats Rudemo et al
Preprint
2007

Quantitative transcriptome, proteome and sulfur metabolite profiling of the Saccharomyces cerevisiae response to arsenite

Michael Thorsen, Gilles Lagniel, Erik Kristiansson et al
Gordon Research Conference on Metals in Biology, Newport, USA
Övrigt konferensbidrag
2006

Quality Optimised Analysis of General Paired Microarray Experiments

Erik Kristiansson, Anders Sjögren, Mats Rudemo et al
Preprint
2006

Taxonomic reliability of DNA sequences in public sequence databases: A fungal perspective

R. Henrik Nilsson, Martin Ryberg, Erik Kristiansson et al
PLoS ONE. Vol. 1 (1), p. e59-
Artikel i vetenskaplig tidskrift
2006

Quality Optimised Analysis of General Paired Microarray Experiments

Erik Kristiansson, Anders Sjögren, Mats Rudemo et al
Statistical Applications in Genetics and Molecular Biology. Vol. 5 (1), p. i-29
Artikel i vetenskaplig tidskrift
2005

A new Method for Analysis of microarray Gene Expression Assays

Erik Kristiansson
Licentiatavhandling
2005

Approaching the taxonomic affiliation of unidentified sequences in public databases : an example from the mycorrhizal fungi

R. Henrik Nilsson, Erik Kristiansson, Martin Ryberg et al
BMC Bioinformatics. Vol. 6 (178)
Artikel i vetenskaplig tidskrift
2005

Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals

Sven Nelander, E. G. Larsson, Erik Kristiansson et al
BMC Genomics. Vol. 6 (1)
Artikel i vetenskaplig tidskrift
2005

Weighted Analysis of Paired Microarray Experiments

Erik Kristiansson, Anders Sjögren, Mats Rudemo et al
Statistical Applications in Genetics and Molecular Biology. Vol. 4 (1)
Artikel i vetenskaplig tidskrift
2005

Weighted Analysis of Paired Microarray Experiments

Erik Kristiansson, Anders Sjögren, Mats Rudemo et al
Preprint
2004

Identifying factors involved in the cellular response to arsenic

Michael Thorsen, Erik Kristiansson, Olle Nerman et al
Yeast Genetics and Molecular Biology Meeting, Seattle, USA
Övrigt konferensbidrag
2004

Identifying factors involved in the cellular response to arsenic

Michael Thorsen, Erik Kristiansson, Olle Nerman et al
Functional Genomics Conference - from birth to death, Göteborg, Sweden
Övrigt konferensbidrag

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Visar 16 forskningsprojekt

2024–2029

Predicting the future spread of antibiotic resistance genes, has been granted funding

Erik Kristiansson Tillämpad matematik och statistik
Johan Bengtsson Palme Systembiologi
Science for Life Laboratory (SciLifeLab)
Knut och Alice Wallenbergs Stiftelse

2024–2027

Förbättrad metodik för källspårning av dioxiner i förorenade sediment (TRACED)

Erik Kristiansson Tillämpad matematik och statistik
Naturvårdsverket

2024–2027

Nya resistensgener mot antibiotik: mobilisering, överföring och selektion

Erik Kristiansson Tillämpad matematik och statistik
Vetenskapsrådet (VR)

2021–2024

Hur Påverkar Smudging Miljöreglering?

Erik Kristiansson Tillämpad matematik och statistik
Naturvårdsverket

2021–2024

Utvärdering av reglering av farliga kemikalier i Europa

Erik Kristiansson Tillämpad matematik och statistik
Formas

2020–2022

JPIAMR-nätverk för sekvensering av mikroorganismer och antimikrobiell resistens (Seq4AMR)

Erik Kristiansson Tillämpad matematik och statistik
Vetenskapsrådet (VR)

2020–2023

Nya resistensgener mot antibiotika och deras spridning i miljön

Erik Kristiansson Tillämpad matematik och statistik
Vetenskapsrådet (VR)

2 publikationer finns
2019–2024

Miljöns roll för utveckling och spridning av antibiotikaresistens

Erik Kristiansson Tillämpad matematik och statistik
Vetenskapsrådet (VR)

1 publikation finns
2017–2019

A novel ultrafast method for detecting multiresistant bacteria in intensive care units

Fredrik Westerlund Kemisk biologi
Erik Kristiansson Tillämpad matematik och statistik
Familjen Erling-Perssons stiftelse

2016–2022

Centrum för framtidens kemiska riskanalyser och styrning FRAM

Erik Kristiansson Tillämpad matematik och statistik
Sverker Molander Environmental Systems Analysis
Göteborgs universitet

1 publikation finns
2013–2014

Statistical and Bioinformatic analysis of next generation sequencing data for exploring the genetic mechanisms behind tumour development

Erik Kristiansson Tillämpad matematik och statistik
Stiftelsen Assar Gabrielssons Fond

2013–2018

Nya karbapenemaser - den outforskade reservoaren i miljön

Erik Kristiansson Tillämpad matematik och statistik
Vetenskapsrådet (VR)

2012–2015

Nya metoder för statistisk inferens i kvantitativ metagenomik

Erik Kristiansson Tillämpad matematik och statistik
Vetenskapsrådet (VR)

2012–2015

Kartläggning av gener som orsakar antibiotikaresistens: nya metoder som använder storskalig DNA-sekvensering

Erik Kristiansson Tillämpad matematik och statistik
Vetenskapsrådet (VR)

1 publikation finns
2011–2017

NICE - ny metodik för effektbaserad bedömning av kemisk förorening i kustekosystem.

Erik Kristiansson Tillämpad matematik och statistik
Martin Eriksson Maritim miljövetenskap
Formas

Det kan finnas fler projekt där Erik Kristiansson medverkar, men du måste vara inloggad som anställd på Chalmers för att kunna se dem.