Erik Kristiansson

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My research focuses on analysis of quantitative data with applications in molecular biology and medicine.More information about me and my research group is available at http://bioinformatics.math.chalmers.se/erikkristiansson/erikkristiansson.html

Source: chalmers.se

Projects

2011–2017

NICE - Novel instruments for effect-based assessment of chemical pollution in coastal ecosystems

Erik Kristiansson Department of Mathematical Sciences, Mathematical Statistics
Martin Eriksson Department of Shipping and Marine Technology, Maritime Environment and Energy Systems
Formas

There might be more projects where Erik Kristiansson participates, but you have to be logged in as a Chalmers employee to see them.

Publications

2016

Draft genome sequence of extended-spectrum-β-lactamase-producing Escherichia coli strain CCUG 62462, isolated from a urine sample

Anna Johnning, Hedvig E Jakobsson, Fredrik Boulund et al
Genome Announcements . Vol. 4 (6), p. e01382-16
Scientific journal article - peer reviewed
2016

Draft Genome Sequence of Streptococcus gordonii Type Strain CCUG 33482T.

Francisco Salvà-Serra, Hedvig E Jakobsson, Kaisa Thorell et al
Genome announcements. Vol. 4 (2)
Scientific journal article - peer reviewed
2016

Draft Genome Sequence of Moraxella catarrhalis Type Strain CCUG 353T.

Hedvig E Jakobsson, Francisco Salvà-Serra, Kaisa Thorell et al
Genome announcements. Vol. 4 (3)
Scientific journal article - peer reviewed
2016

HattCI: Fast and Accurate attC site Identification Using Hidden Markov Models.

Mariana Buongermino Pereira, Mikael Wallroth, Erik Kristiansson et al
Journal of Computational Biology. Vol. 23 (11), p. 891-902
Scientific journal article - peer reviewed
2016

Variability in Metagenomic Count Data and Its Influence on the Identification of Differentially Abundant Genes.

Viktor Jonsson, Tobias Österlund, Olle Nerman et al
Journal of computational biology : a journal of computational molecular cell biology
Scientific journal article - peer reviewed
2016

Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping.

Vilhelm Müller, Fredrika Rajer, Karolin Frykholm et al
Scientific reports. Vol. 6, p. 37938
Scientific journal article - peer reviewed
2016

The structure and diversity of human, animal and environmental resistomes

Chandan Pal, Johan Bengtsson-Palme, Erik Kristiansson et al
Microbiome. Vol. 4, p. artikel nr 54
Scientific journal article - peer reviewed
2016

Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)

Kessy Abarenkov, Rachel I. Adams, Irinyi Laszlo et al
MycoKeys. Vol. 16, p. 1-15
Scientific journal article - peer reviewed
2016

Biomarker responses in eelpouts from four coastal areas in Sweden, Denmark and Germany

Noomi Asker, Eva Albertsson, Emma Wijkmark et al
Marine Environmental Research. Vol. 120, p. 32-43
Scientific journal article - peer reviewed
2016

Elucidating selection processes for antibiotic resistance in sewage treatment plants using metagenomics

Johan Bengtsson-Palme, Rickard Hammarén, Chandan Pal et al
Science of the Total Environment. Vol. 572, p. 697-712
Scientific journal article - peer reviewed
2016

Patient-tailored analysis of minimal residual disease in acute myeloid leukemia using next generation sequencing.

Erik Br Malmberg, Sara Ståhlman, Anna Rehammar et al
European journal of haematology. Vol. Epub ahead of print
Scientific journal article - peer reviewed
2016

New Ph.D. students in the empirical sciences should be recruited into ongoing scientific studies right from the start

Martin Ryberg, Erik Kristiansson, Christian Wurzbacher et al
Journal of Brief Ideas
Scientific journal article - non peer reviewed
2016

Top 50 most wanted fungi

R. Henrik Nilsson, Christian Wurzbacher, Mohammad Bahram et al
MycoKeys. Vol. 12, p. 29-40
Scientific journal article - peer reviewed
2016

Expression profiling of small intestinal neuroendocrine tumors identifies subgroups with clinical relevance, prognostic markers and therapeutic targets.

Ellinor Andersson, Yvonne Arvidsson, Christina Swärd et al
Modern Pathology. Vol. 29 (6), p. 616-629
Scientific journal article - peer reviewed
2016

Malignant pheochromocytomas/paragangliomas harbor mutations in transport and cell adhesion genes.

Annica Wilzén, Anna Rehammar, Andreas Muth et al
International journal of cancer. Vol. 138 (9), p. 2201-11
Scientific journal article - peer reviewed
2016

Statistical evaluation of methods for identification of differentially abundant genes in comparative metagenomics

Viktor Jonsson, Tobias Österlund, Olle Nerman et al
BMC Genomics. Vol. 17
Scientific journal article - peer reviewed
2015

Proteotyping: Proteomic characterization, classification and identification of microorganisms--A prospectus.

Roger Karlsson, Lucia Gonzales-Siles, Fredrik Boulund et al
Systematic and Applied Microbiology. Vol. 38 (4), p. 246-257
Scientific journal article - peer reviewed
2015

Patient-Tailored Analysis of Minimal Residual Disease in Acute Myeloid Leukemia Using Next Generation Sequencing

Erik Malmberg, Sara Ståhlman, Anna Rehammar et al
Blood. 57th ASH Annual Meeting and Exposition. Orlando, FL, USA. December 5-8, 2015. Vol. 126 (23), p. 3841
Conference Abstract - peer reviewed
2015

Resistance Mutations in gyrA and parC are Common in Escherichia Communities of both Fluoroquinolone-Polluted and Uncontaminated Aquatic Environments

Anna Johnning, Erik Kristiansson, Jerker Fick et al
Frontiers in Microbiology. Vol. 6, p. 1355
Scientific journal article - peer reviewed
2015

Quinolone resistance mutations in the faecal microbiota of Swedish travellers to India

Anna Johnning, Erik Kristiansson, M. Angelin et al
BMC Microbiology. Vol. 15, p. Article Number: 235
Scientific journal article - peer reviewed
2015

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential

Chandan Pal, Johan Bengtsson-Palme, Erik Kristiansson et al
BMC Genomics. Vol. 16, p. 964
Scientific journal article - peer reviewed
2015

Tentacle: distributed quantification of genes in metagenomes

Fredrik Boulund, Anders Sjögren, Erik Kristiansson et al
GigaScience. Vol. 4, p. artikel nr 40
Scientific journal article - peer reviewed
2015

Metagenomic Sequencing of Marine Periphyton: Taxonomic and Functional Insights into Biofilm Communities

Kemal Sanli, Johan Bengtsson-Palme, R. Henrik Nilsson et al
Frontiers in Microbiology. Vol. 6 (1192)
Scientific journal article - peer reviewed
2015

Optical mapping of single DNA molecules in nanochannels: A novel method for identification and characterization of antibiotic resistance

Lena Nyberg, Gustav Emilsson, A. Nilsson et al
18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014, p. 1045-1047
Conference paper - peer reviewed
2015

Isolation of novel IncA/C and IncN fluoroquinolone resistance plasmids from an antibiotic-polluted lake

Carl-Fredrik Flach, Anna Johnning, Ida Nilsson et al
Journal of Antimicrobial Chemotherapy. Vol. 70 (10), p. 2709-2717
Scientific journal article - peer reviewed
2015

The human gut microbiome as a transporter of antibiotic resistance genes between continents

Johan Bengtsson-Palme, Martin Angelin, Mikael Huss et al
Antimicrobial Agents and Chemotherapy. Vol. 59 (10), p. 6551-6560
Scientific journal article - peer reviewed
2015

A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts

R. Henrik Nilsson, Leho Tedersoo, Martin Ryberg et al
Microbes and Environments. Vol. 30 (2), p. 145-150
Scientific journal article - peer reviewed
2015

Waterborne beclomethasone dipropionate affects the physiology of fish while its metabolite beclomethasone is not taken up

Bethanie Carney Almroth, Lina-Maria Gunnarsson, Filip Cuklev Stern et al
Science of the Total Environment. Vol. 511, p. 37-46
Scientific journal article - peer reviewed
2014

Genetic Copy Number Variations in Colon Mucosa Indicating Risk for Colorectal Cancer.

Annika Gustafsson Asting, Kristina Lagerstedt, Erik Kristiansson et al
Journal of Cancer Therapy. Vol. 5 (14)
Scientific journal article - peer reviewed
2014

Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India

Johan Bengtsson-Palme, Fredrik Boulund, Jerker Fick et al
Frontiers in Microbiology. Vol. 5 (648)
Scientific journal article - peer reviewed
2014

Assessing variation in the potential susceptibility of fish to pharmaceuticals, considering evolutionary differences in their physiology and ecology

A. R. Brown, L. Gunnarsson, Erik Kristiansson et al
Philosophical Transactions of the Royal Society B-Biological Sciences. Vol. 369 (1656), p. Art. no. 20130576
Scientific journal article - peer reviewed
2014

Fluoroquinolones and qnr genes in sediment, well water, soil and human fecal flora in an Indian environment polluted by drug manufacturing

Carolin Rutgersson, Jerker Fick, Nachiket Marathe et al
Environmental Science and Technology. Vol. 48 (14), p. 7825−7832
Scientific journal article - peer reviewed
2014

BacMet: antibacterial biocide and metal resistance genes database

Chandan Pal, Johan Bengtsson-Palme, Christopher Rensing et al
Nucleic Acids Research. Vol. 42 (D1), p. D737-D743
Scientific journal article - peer reviewed
2013

Functional verification of computationally predicted qnr genes

Carl-Fredrik Flach, Fredrik Boulund, Erik Kristiansson et al
Annals of Clinical Microbiology and Antimicrobials. Vol. 12, p. artikel nr 34
Scientific journal article - peer reviewed
2013

Acquired genetic mechanisms of a multiresistant bacterium isolated from a treatment plant receiving wastewater from antibiotic production.

Anna Johnning, Edward R.B. Moore, Liselott Svensson-Stadler et al
Applied and environmental microbiology. Vol. 79 (23), p. 7256-63
Scientific journal article - peer reviewed
2013

ERBB3 is a marker of a ganglioneuroblastoma/ganglioneuroma-like expression profile in neuroblastic tumours.

Annica Wilzén, Cecilia Krona, Baldur Sveinbjörnsson et al
Molecular cancer. Vol. 12 (July 2013), p. artikel nr 70
Scientific journal article - peer reviewed
2013

Expression of the glucocorticoid receptor is decreased in experimental Staphylococcus aureus sepsis.

Maria Bergquist, Merja Nurkkala, Christian Rylander et al
The Journal of infection. Vol. 67 (6), p. 574–583
Scientific journal article - peer reviewed
2013

High levels of quinolone resistance genes found near a waste water treatment plant serving antibiotic manufacturers

Carolin Rutgersson, Carl-Fredrik Flach, Nachiket Marathe et al
52nd International Conference on Antimicrobial Agents and Chemotherapy (ICAAC), 9-12 September 2012, San Francisco (C1-665)
Conference poster
2013

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

Johan Bengtsson-Palme, Martin Ryberg, Martin Hartmann et al
Methods in Ecology and Evolution. Vol. 4 (10), p. 914-919
Scientific journal article - peer reviewed
2013

A novel method for cross-species gene expression analysis

Erik Kristiansson, Tobias Österlund, Lina-Maria Gunnarsson et al
BMC Bioinformatics. Vol. 14, p. artikel nr 70
Scientific journal article - peer reviewed
2013

Hepatic transcriptome profiling indicates differential mRNA expression of apoptosis and immune related genes in eelpout (Zoarces viviparus) caught at Göteborg harbor, Sweden

Noomi Asker, Erik Kristiansson, Eva Albertsson et al
Aquatic Toxicology. Vol. 130-131, p. 58-67
Scientific journal article - peer reviewed
2013

Incorporating molecular data in fungal systematics: a guide for aspiring researchers

Kevin D. Hyde, Dhanushka Udayanga, Dimuthu S. Manamgoda et al
Current Research in Environmental and Applied Mycology. Vol. 3 (1), p. artikel nr 1
Scientific journal article - peer reviewed
2013

Oral exposure to industrial effluent with exceptionally high levels of drugs does not indicate acute toxic effects in rats

Carolin Rutgersson, Lina-Maria Gunnarsson, J. Fick et al
Environmental Toxicology and Chemistry. Vol. 32 (3), p. 577-584
Scientific journal article - peer reviewed
2013

Gastrointestinal stromal tumors (GISTs) express somatostatin receptors and bind radiolabeled somatostatin analogs.

Gabriella Arne, Bengt E Nilsson, Johanna Dalmo et al
Acta oncologica (Stockholm, Sweden). Vol. 52 (4), p. 783-792
Scientific journal article - peer reviewed
2012

A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences

Fredrik Boulund, Anna Johnning, Mariana Buongermino Pereira et al
BMC Genomics. Vol. 13 (1), p. 695
Scientific journal article - peer reviewed
2012

Does ketoprofen or diclofenac pose the lowest risk to fish?

Filip Cuklev, J. Fick, Marija Cvijovic et al
Journal of Hazardous Materials. Vol. 229-230, p. 100-106
Scientific journal article - peer reviewed
2012

Comprehensive Analysis of Antibiotic Resistance Genes Using Metagenomic DNA Sequencing: Studies of Contaminated River Sediment, Well Water and Soil Microbial Communities

Johan Bengtsson, Fredrik Boulund, Jerker Fick et al
ISME14 Conference, Copenhagen, Denmark, 2012-08-20
Conference poster
2012

Comprehensive Analysis of Antibiotic Resistance Genes Using Metagenomic DNA Sequencing: Studies of Contaminated River Sediment, Well Water and Soil Microbial Communities

Johan Bengtsson, Fredrik Boulund, Jerker Fick et al
SocBiN Bioinformatics Conference 2012, Stockholm, Sweden, 2012-06-11
Conference poster
2012

Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences

R. Henrik Nilsson, Leho Tedersoo, Kessy Abarenkov et al
MycoKeys. Vol. 4, p. 37-63
Scientific journal article - peer reviewed
2012

Global hepatic gene expression in rainbow trout exposed to sewage effluents: A comparison of different sewage treatment technologies

Filip Cuklev, Lina-Maria Gunnarsson, Marija Cvijovic et al
Science of the Total Environment. Vol. 427-428, p. 106-114
Scientific journal article - peer reviewed
2012

Estradiol ameliorates arthritis and protects against systemic bone loss in Staphylococcus aureus infection in mice

Inger Gjertsson, Erik Kristiansson, Marie Lagerquist et al
Arthritis Research & Therapy. Vol. 14 (2), p. artikel nr R76
Scientific journal article - peer reviewed
2011

Environmental Comparative Pharmacology: Theory and application

Lina-Maria Gunnarsson, Duane Huggett, Erik Kristiansson et al
Human Pharmaceuticals in the Environment - Current and Future Perspectives. Eds. Brooks B, Huggett D., p. 85-108
Chapter in monograph, book - peer reviewed
2011

Exploring the metagenomes of environmental antibiotic hotspots to identify resistance factors that we may face in the clinic tomorrow

D. G. Joakim Larsson, Anders Janzon, Anna Johnning et al
SETAC Europe 21st Annual Meeting; Ecosystem Protection in a Sustainable World: A challenge for Science and Regulation 15-19 May 2011, p. 38
Conference poster
2011

The genome of an extensively drug-resistant bacterium isolated from a wastewater treatment plant receiving effluent from antibiotic manufacturing

Anna Johnning, Erik Kristiansson, Y. Shouche et al
SETAC Europe 21st Annual Meeting; Ecosystem Protection in a Sustainable World: A challenge for Science and Regulation 15-19 May 2011, p. 212
Conference poster
2011

Antibiotika i miljön tros öka risken för spridning av resistensgener mellan arter.

D. G. Joakim Larsson, Erik Kristiansson,
Läkartidningen, Nya Rön (12)
Scientific journal article - non peer reviewed
2011

Environmental microbial communities living under very high antibiotic selection pressure

Anders Janzon, Erik Kristiansson, D. G. Joakim Larsson et al
Antimicrobial Resistance in the Environment. Eds. Keen P. , Montforts MH, (in press. Dec 2011)
Chapter in monograph, book
2011

Diclofenac in fish: Blood plasma levels similar to human therapeutic levels affect global hepatic gene expression.

Filip Cuklev, Erik Kristiansson, Jerker Fick et al
Environmental toxicology and chemistry / SETAC. Vol. 30 (9), p. 2126-34
Scientific journal article - peer reviewed
2011

Physiology and mRNA expression in rainbow trout (Oncorhynchus mykiss) after long-term exposure to the new antifoulant medetomidine.

Anna Lennquist, Noomi Asker, Erik Kristiansson et al
Comparative biochemistry and physiology. Toxicology & pharmacology : CBP. Vol. 154 (3), p. 234-41
Scientific journal article - peer reviewed
2011

Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance and Gene Transfer Elements

Erik Kristiansson, J. Fick, Anders Janzon et al
Plos One. Vol. 6 (2)
Scientific journal article - peer reviewed
2011

Expression profiling of GIST: CD133 is associated with KIT exon 11 mutations, gastric location, and poor prognosis.

Gabriella Arne, Erik Kristiansson, Olle Nerman et al
International journal of cancer. Journal international du cancer. Vol. 129 (5), p. 1149-1161
Scientific journal article - peer reviewed
2010

Antibiotic-contaminated effluent promotes mobile resistance in environmental baceria

Erik Kristiansson, J Fick, Anders Janzon et al
35th Congress of the Federation of European Biochemial Societies (FEBS), Gothenburg, June 26 - July 1, 2010.. Vol. 277 (Suppl 1), p. 105
Conference poster
2010

Whole genome sequencing of a multiresistant bacterium isolated from a wastewater treatment plant receiving effluent from antibiotic drug manufactureing

Anna Johnning, Erik Kristiansson, Y.S Shouche et al
35th Congress of the Federation of European Biochemical Societies (FEBS), Gothenburg, June 26 - July 1, 2010. Vol. 277 (Suppl 1), p. 105
Conference poster
2010

Environmental biomonitoring of Zoarces viviparus in combination with large scale gene expression profiling

Noomi Asker, Erik Kristiansson, D. G. Joakim Larsson et al
27th Congress of the European Society of Comparative Biochemistry and Physiology, Alessandria, Italy. Sept 5-9, 2010. Vol. 157 (Suppl 1), p. S6-S7
Conference poster
2010

Exploring the microbial resistome in river sediments exposed to extraordinary high levels of antibiotics

Anders Janzon, Carolin Rutgersson, Erik Kristiansson et al
35th FEBS Congress: Molecules of Life
Conference poster
2010

An open source chimera checker for the fungal ITS region

R. Henrik Nilsson, Kessy Abarenkov, Vilmar Veldre et al
Molecular Ecology Resources. Vol. 10 (6), p. 1076-1081
Scientific journal article - peer reviewed
2010

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

R. Henrik Nilsson, Vilmar Veldre, Martin Hartmann et al
Fungal Ecology. Vol. 3 (4), p. 284-287
Scientific journal article - peer reviewed
2010

An open source chimera checker for the fungal ITS region

R. Henrik Nilsson, Vilmar Veldre, Kessy Abarenkov et al
9th International Mycological Congress, Edinburgh, UK
Conference poster
2010

Colour and melanophore function in rainbow trout after long term exposure to the new antifoulant medetomidine

Anna Lennquist, Lena Mårtensson Lindblad, Daniel Hedberg et al
Chemosphere. Vol. 80 (9), p. 1050-1055
Scientific journal article - peer reviewed
2010

Genes with relevance for early to late progression of colon carcinoma based on combined genomic and transcriptomic information from the same patients.

Kristina Lagerstedt, Erik Kristiansson, Christina Lönnroth et al
Cancer informatics. Vol. 9, p. 79-91
Scientific journal article - peer reviewed
2010

Hypoxia stimulates CXCR4 signalling in ileal carcinoids.

Yvonne Arvidsson, Anders Bergström, Linda Arvidsson et al
Endocrine-related cancer. Vol. 17 (2), p. 303-316
Scientific journal article - peer reviewed
2009

Pharmaceutical industry effluent diluted 1:500 affects global hepatic gene expression, CYP1A activity and plasma phosphate in fish

Lina-Maria Gunnarsson, Erik Kristiansson, Carolin Rutgersson et al
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009
Conference paper - peer reviewed
2009

Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing.

Erik Kristiansson, Noomi Asker, Lars Förlin et al
Swedish Bioinformatics Workshop Abstract book, Umeå, March 12-13, 2009
Conference paper - peer reviewed
2009

Large-scale gene expression analysis in non-model organisms – de novo transcriptome sequencing and microarray design.

Erik Kristiansson, Noomi Asker, Lars Förlin et al
Swedish Bioinformatics Workshop Abstract book, Umeå, March 12-13, 2009
Conference paper - peer reviewed
2009

Multi-endpoint studies on the eelpout (Zoarces viviparus), using gene expression oligonucleotide microarray

Noomi Asker, Erik Kristiansson, D. G. Joakim Larsson et al
PRIMO 15th International Symposium Abstract Book, Bordeaux, May 17-20, 2009
Conference paper - peer reviewed
2009

Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing

Noomi Asker, Erik Kristiansson, Lars Förlin et al
PRIMO 15th International Symposium Abstract Book, Bordeaux, May 17-20, 2009
Conference paper - peer reviewed
2009

Short-term oral exposure to effluent from bulk drug industries does not indicate acute toxic effects in rat

Carolin Rutgersson, Lina-Maria Gunnarsson, Erik Kristiansson et al
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009, p. 255
Conference paper - peer reviewed
2009

Dose-response effects on global hepatic gene expression in rainbow trout exposed to diclofenac

Filip Cuklev, Erik Kristiansson, Jerker Fick et al
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009, p. 154
Conference paper - peer reviewed
2009

Multi-endpoint studies on the eelpout (Zoarces viviparus), using gene expression oligonucleotide microarray

Noomi Asker, Erik Kristiansson, D. G. Joakim Larsson et al
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009, p. 150
Conference paper - peer reviewed
2009

Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing

Erik Kristiansson, Noomi Asker, Lars Förlin et al
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009, p. 119
Conference paper - peer reviewed
2009

identification of novel biomarkers - a framework for cross-species gene expression analysis

Tobias Österlund, Lina-Maria Gunnarsson, D. G. Joakim Larsson et al
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009, p. 118
Conference paper - peer reviewed
2009

Release of fluoroquinolones and other active pharmaceutical ingredients from Indian bulk drug manufacture – environmental fate and effects on antibiotic resistance development, microbial ecosystems and aquatic vertebrates. Invited platform presentation.

D. G. Joakim Larsson, J Fick, Yougesh Schouche et al
The Annual meeting of the Society for General Microbiology, March 30-April 2, Harrogate, UK, p. 5 (HAR03)
Conference paper - peer reviewed
2009

Establishing the barnacle Balanus improvisus as a potent invertebrate monitoring system in marine ecotoxicogenomics

Anders Blomberg, Susanna Falkbring, Magnus Alm Rosenblad et al
SETAC Europe 19th Annual Meeting Abstract Book, Göteborg 31 May - 4 June, 2009, p. 111
Conference poster
2009

Monitoring of the viviparous fish species eelpout (Zoarces viviparus) indicates environmental changes in coastal waters.

Lars Förlin, Joachim Sturve, Jari Parkkonen et al
19th Annual Meeting of SETAC Europe, SETAC 2009 Göteborg, May 31- June 4, 2009
Conference paper - peer reviewed
2009

Predicting functional upstream open reading frames in Saccharomyces cerevisiae

. Selpi, Christopher H. Bryant, Graham J.L. Kemp et al
BMC Bioinformatics. Vol. 10, p. 451
Scientific journal article - peer reviewed
2009

ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes

Erik Kristiansson, Philip Hugenholtz, Daniel Dalevi et al
Bioinformatics. Vol. 25 (20), p. 2737-2738
Scientific journal article - peer reviewed
2009

Pharmaceutical Industry Effluent Diluted 1:500 Affects Global Gene Expression, Cytochrome P4501A Activity and Plasma Phosphate in Fish.

Lina-Maria Gunnarsson, Erik Kristiansson, Carolin Rutgersson et al
Environmental toxicology and chemistry / SETAC. Vol. 28 (12), p. 2639-2647
Scientific journal article - peer reviewed
2009

Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing

Erik Kristiansson, Noomi Asker, Lars Förlin et al
BMC Genomics. Vol. 10 (345)
Scientific journal article - peer reviewed
2009

Evolutionary Forces Act on Promoter Length: Identification of Enriched Cis-Regulatory Elements

Erik Kristiansson, Michael Thorsen, Markus J. Tamás et al
Molecular Biology and Evolution. Vol. 26 (6), p. 1299-1307
Scientific journal article - peer reviewed
2009

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies

R. Henrik Nilsson, Martin Ryberg, Kessy Abarenkov et al
FEMS Microbiology Letters. Vol. 296 (1), p. 97-101
Scientific journal article - peer reviewed
2009

Genetic basis of arsenite and cadmium tolerance in Saccharomyces cerevisiae.

Michael Thorsen, Gabriel G Perrone, Erik Kristiansson et al
BMC genomics. Vol. 10, p. 105
Scientific journal article - peer reviewed
2009

A software pipeline for processing and identification of fungal ITS sequences

R. Henrik Nilsson, Gunilla Bok, Martin Ryberg et al
Source Code for Biology and Medicine. Vol. 4 (1)
Scientific journal article - peer reviewed
2009

An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity

Martin Ryberg, Erik Kristiansson, Elisabet Sjökvist et al
New Phytologist. Vol. 181 (2), p. 471-477
Scientific journal article - peer reviewed
2008

Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing

Erik Kristiansson, Noomi Asker, Lars Förlin et al
The 9th International Conference on System Biology (ICSB) abstract book, Göteborg, August 22-28, 2008
Conference paper - peer reviewed
2008

Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification

R. Henrik Nilsson, Erik Kristiansson, Martin Ryberg et al
Evolutionary Bioinformatics. Vol. 2008 (4), p. 193-201
Scientific journal article - peer reviewed
2008

Evolutionary conservation of human drug targets in organisms used for environmental risk assessments.

Lina-Maria Gunnarsson, Alexandra Jauhiainen, Erik Kristiansson et al
Environmental science & technology. Vol. 42 (15), p. 5807-13
Scientific journal article - peer reviewed
2008

Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota)

Martin Ryberg, R. Henrik Nilsson, Erik Kristiansson et al
BMC Evolutionary Biology. Vol. 8 (50)
Scientific journal article - peer reviewed
2007

Quantitative transcriptome, proteome and sulfur metabolite profiling of the Saccharomyces cerevisiae response to arsenite

Michael Thorsen, Gilles Lagniel, Erik Kristiansson et al
Gordon Research Conference on Metals in Biology, Newport, USA
Conference paper - non peer reviewed
2007

Weighted Analysis of General Microarray Experiments

Anders Sjögren, Erik Kristiansson, Mats Rudemo et al
Preprint
2007

Quantitative transcriptome, proteome and sulfur metabolite profiling of the Saccharomyces cerevisiae response to arsenite

Michael Thorsen, Gilles Lagniel, Erik Kristiansson et al
Physiological Genomics. Vol. 30, p. 35-43
Scientific journal article - peer reviewed
2007

Sensitive and robust gene expression changes in fish exposed to estrogen – a microarray approach

Lina-Maria Gunnarsson, Erik Kristiansson, Lars Förlin et al
BMC Genomics. Vol. 8 (149)
Scientific journal article - peer reviewed
2007

Weighted Analysis of General Microarray Experiments

Anders Sjögren, Erik Kristiansson, Mats Rudemo et al
BMC Bioinformatics. Vol. 8, p. 15
Scientific journal article - peer reviewed
2007

Statistical analysis of gene expression data

Erik Kristiansson,
Doctoral thesis
2006

Quality Optimised Analysis of General Paired Microarray Experiments

Erik Kristiansson, Anders Sjögren, Mats Rudemo et al
Preprint
2006

Taxonomic reliability of DNA sequences in public sequence databases: A fungal perspective

R. Henrik Nilsson, Martin Ryberg, Erik Kristiansson et al
PLoS ONE . Vol. 1 (1), p. e59
Scientific journal article - peer reviewed
2006

Quality Optimised Analysis of General Paired Microarray Experiments

Erik Kristiansson, Anders Sjögren, Mats Rudemo et al
Statistical Applications in Genetics and Molecular Biology. Vol. 5 (1), p. i-29
Scientific journal article - peer reviewed
2005

Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals

Sven Nelander, Erik Larsson, Erik Kristiansson et al
BMC genomics. Vol. 6 (1), p. 68
Scientific journal article - peer reviewed
2005

Approaching the taxonomic affiliation of unidentified sequences in public databases – an example from the mycorrhizal fungi

R. Henrik Nilsson, Erik Kristiansson, Martin Ryberg et al
BMC Bioinformatics. Vol. 6 (178)
Scientific journal article - peer reviewed
2005

Weighted Analysis of Paired Microarray Experiments

Erik Kristiansson, Anders Sjögren, Mats Rudemo et al
Statistical Applications in Genetics and Molecular Biology. Vol. 4 (1)
Scientific journal article - peer reviewed
2005

Weighted Analysis of Paired Microarray Experiments

Erik Kristiansson, Anders Sjögren, Mats Rudemo et al
Preprint
2005

A new Method for Analysis of microarray Gene Expression Assays

Erik Kristiansson,
Licentiate thesis
2004

Identifying factors involved in the cellular response to arsenic

Michael Thorsen, Erik Kristiansson, Olle Nerman et al
Functional Genomics Conference - from birth to death, Göteborg, Sweden
Conference paper - non peer reviewed
2004

Identifying factors involved in the cellular response to arsenic

Michael Thorsen, Erik Kristiansson, Olle Nerman et al
Yeast Genetics and Molecular Biology Meeting, Seattle, USA
Conference paper - non peer reviewed