Erik Kristiansson
My research focuses on analysis of quantitative data with applications in molecular biology and medicine.
More information about me and my research group is available at http://bioinformatics.math.chalmers.se/erikkristiansson/erikkristiansson.html
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Showing 187 publications
Transformers enable accurate prediction of acute and chronic chemical toxicity in aquatic organisms
How, not if, is the question mycologists should be asking about DNA-based typification
Evidence for wastewaters as environments where mobile antibiotic resistance genes emerge
The curse of the uncultured fungus
An updated phylogeny of the metallo-β-lactamases
A framework for identifying the recent origins of mobile antibiotic resistance genes
SMAD4 haploinsufficiency in small intestinal neuroendocrine tumors
MYO5B Mutations in Pheochromocytoma/Paraganglioma Promote Cancer Progression
Structural and biochemical characterization of the environmental MBLs MYO-1, ECV-1 and SHD-1
Cultivation-Free Typing of Bacteria Using Optical DNA Mapping
Predicting clinical resistance prevalence using sewage metagenomic data
MYO5B mutations in pheochromocytoma/paraganglioma promote cancer progression
When mycologists describe new species, not all relevant information is provided (clearly enough)
A comprehensive survey of integron-associated genes present in metagenomes
The Association between Insertion Sequences and Antibiotic Resistance Genes
Phosphorylated CtIP bridges DNA to promote annealing of broken ends
Pharmacology beyond the patient – The environmental risks of human drugs
Modelling of zero-inflation improves inference of metagenomic gene count data
Identification and reconstruction of novel antibiotic resistance genes from metagenomes
Sewage from Airplanes Exhibits High Abundance and Diversity of Antibiotic Resistance Genes
PER extended-spectrum β-lactamases originate from Pararheinheimera spp
Bacterial identification by optical mapping of genomic DNA in nanofluidic channels
The mobile FOX AmpC beta-lactamases originated in Aeromonas allosaccharophila
177 Lu-octreotate therapy for neuroendocrine tumours is enhanced by Hsp90 inhibition
Introducing ribosomal tandem repeat barcoding for fungi
ECOdrug: A database connecting drugs and conservation of their targets across species
The resistomes of six carbapenem-resistant pathogens - a critical genotype-phenotype analysis
The neuroendocrine phenotype, genomic profile and therapeutic sensitivity of GEPNET cell lines
Computational and Statistical Considerations in the Analysis of Metagenomic Data
Environmental factors influencing the development and spread of antibiotic resistance
Comparison of normalization methods for the analysis of metagenomic gene abundance data
HirBin: High-resolution identification of differentially abundant functions in metagenomes
Integrative analysis of omics data
Using metagenomics to investigate human and environmental resistomes
Does antifouling paint select for antibiotic resistance?
Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics
Discovery of the fourth mobile sulfonamide resistance gene
Draft Genome Sequence of Streptococcus gordonii Type Strain CCUG 33482T.
Draft Genome Sequence of Moraxella catarrhalis Type Strain CCUG 353T.
Malignant pheochromocytomas/paragangliomas harbor mutations in transport and cell adhesion genes.
Detailed characterization of plasmids carrying resistance genes using optical DNA mapping
The structure and diversity of human, animal and environmental resistomes
HattCI: Fast and Accurate attC site Identification Using Hidden Markov Models.
Biomarker responses in eelpouts from four coastal areas in Sweden, Denmark and Germany
The human gut microbiome as a transporter of antibiotic resistance genes between continents
Quinolone resistance mutations in the faecal microbiota of Swedish travellers to India
Tentacle: distributed quantification of genes in metagenomes
Genetic Copy Number Variations in Colon Mucosa Indicating Risk for Colorectal Cancer.
BacMet: antibacterial biocide and metal resistance genes database
Expression of the glucocorticoid receptor is decreased in experimental Staphylococcus aureus sepsis.
Incorporating molecular data in fungal systematics: a guide for aspiring researchers
A novel method for cross-species gene expression analysis
Functional verification of computationally predicted qnr genes
Does ketoprofen or diclofenac pose the lowest risk to fish?
Antibiotika i miljön tros öka risken för spridning av resistensgener mellan arter.
Environmental Comparative Pharmacology: Theory and application
Environmental microbial communities living under very high antibiotic selection pressure
Antibiotic-contaminated effluent promotes mobile resistance in environmental baceria
Hypoxia stimulates CXCR4 signalling in ileal carcinoids.
An open source chimera checker for the fungal ITS region
An open source chimera checker for the fungal ITS region
Predicting functional upstream open reading frames in Saccharomyces cerevisiae
Evolutionary Forces Act on Promoter Length: Identification of Enriched Cis-Regulatory Elements
Genetic basis of arsenite and cadmium tolerance in Saccharomyces cerevisiae.
A software pipeline for processing and identification of fungal ITS sequences
Dose-response effects on global hepatic gene expression in rainbow trout exposed to diclofenac
ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
identification of novel biomarkers - a framework for cross-species gene expression analysis
Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota)
Weighted Analysis of General Microarray Experiments
Sensitive and robust gene expression changes in fish exposed to estrogen – a microarray approach
Weighted Analysis of General Microarray Experiments
Quality Optimised Analysis of General Paired Microarray Experiments
Taxonomic reliability of DNA sequences in public sequence databases: A fungal perspective
Quality Optimised Analysis of General Paired Microarray Experiments
A new Method for Analysis of microarray Gene Expression Assays
Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals
Weighted Analysis of Paired Microarray Experiments
Weighted Analysis of Paired Microarray Experiments
Identifying factors involved in the cellular response to arsenic
Identifying factors involved in the cellular response to arsenic
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Showing 14 research projects
The mobilization, transfer, and promotion of new antibiotic-resistance genes
Smudging and its Effects on Environmental Regulations
Utvärdering av reglering av farliga kemikalier i Europa
JPIAMR Network for Synergism in Microbial Sequencing and Antimicrobial Resistance (Seq4AMR)
The diversity and mobility of novel antibiotic resistance genes
The Environment as a Driver of Antibiotic Resistance (EDAR)
A novel ultrafast method for detecting multiresistant bacteria in intensive care units
The FRAM Centre for Future Chemical Risk Assessment and Management Strategie
NoCURE: Novel Carbapenemases - UnRaveling the Enviromental reservoir
Novel methods for improved statistical inference in quantitative metagenomics
NICE - Novel instruments for effect-based assessment of chemical pollution in coastal ecosystems