Lighting Up DNA with the Environment-Sensitive Bright Adenine Analogue qAN4
Artikel i vetenskaplig tidskrift, 2020

The fluorescent adenine analogue qAN4 was recently shown to possess promising photophysical properties, including a high brightness as a monomer. Here we report the synthesis of the phosphoramidite of qAN4 and its successful incorporation into DNA oligonucleotides using standard solid-phase synthesis. Circular dichroism and thermal melting studies indicate that the qAN4-modification has a stabilizing effect on the B-form of DNA. Moreover, qAN4 base-pairs selectively with thymine with mismatch penalties similar to those of mismatches of adenine. The low energy absorption band of qAN4 inside DNA has its peak around 358 nm and the emission in duplex DNA is partly quenched and blue-shifted (ca. 410 nm), compared to the monomeric form. The spectral properties of the fluorophore also show sensitivity to pH; a property that may find biological applications. Quantum yields in single-stranded DNA range from 1-29 % and in duplex DNA from 1-7 %. In combination with the absorptive properties, this gives an average brightness inside duplex DNA of 275 M-1  cm-1 , more than five times higher than the most used environment-sensitive fluorescent base analogue, 2-aminopurine. Finally, we show that qAN4 can be used to advantage as a donor for interbase FRET applications in combination with adenine analogue qAnitro as an acceptor.

nucleobase analogues

DNA

FRET

base pairing

photophysics

Författare

Anders Foller Füchtbauer

Göteborgs universitet

Moa Sandberg Wranne

Chalmers, Kemi och kemiteknik, Kemi och biokemi

Sangamesh Sarangamath

Chalmers, Kemi och kemiteknik, Kemi och biokemi, Fysikalisk kemi

Mattias Bood

AstraZeneca AB

Göteborgs universitet

Afaf El-Sagheer

University of Oxford

Suez University

T. Brown

University of Oxford

Henrik Gradén

AstraZeneca AB

Morten Grötli

Göteborgs universitet

Marcus Wilhelmsson

Chalmers, Kemi och kemiteknik, Kemi och biokemi

ChemPlusChem

2192-6506 (ISSN)

Vol. 85 2 319-326

Ämneskategorier

Polymerkemi

Fysikalisk kemi

Atom- och molekylfysik och optik

DOI

10.1002/cplu.201900712

PubMed

32045137

Mer information

Senast uppdaterat

2020-02-17