Johan Gustafsson

Showing 15 publications

2024

Brain energy metabolism is optimized to minimize the cost of enzyme synthesis and transport

Johan Gustafsson, Jonathan Robinson, Henrik Zetterberg et al
Proceedings of the National Academy of Sciences of the United States of America. Vol. 121 (7)
Journal article
2024

Single-cell omics analysis with genome-scale metabolic modeling

Yu Chen, Johan Gustafsson, Jingyu Yang et al
Current Opinion in Biotechnology. Vol. 86
Review article
2024

Metabolic collaboration between cells in the tumor microenvironment has a negligible effect on tumor growth

Johan Gustafsson, Fariba Roshanzamir, Anders Hagnestål et al
Innovation. Vol. 5 (2)
Journal article
2024

Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0

Yu Chen, Johan Gustafsson, Albert Tafur Rangel et al
Nature Protocols. Vol. 19 (3), p. 629-667
Journal article
2023

Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data

Johan Gustafsson, Petre Mihail Anton, Fariba Roshanzamir et al
Proceedings of the National Academy of Sciences of the United States of America. Vol. 120 (6)
Journal article
2023

Genome-scale metabolic models applied for human health and biopharmaceutical engineering

Feiran Li, Yu Chen, Johan Gustafsson et al
Quantitative Biology. Vol. 11 (4), p. 363-375
Review article
2022

Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data

Johan Gustafsson, Jonathan Robinson, Fariba Roshanzamir et al
Preprint
2022

Cellular limitation of enzymatic capacity explains glutamine addiction in cancers

Johan Gustafsson, Fariba Roshanzamir, Anders Hagnestål et al
Preprint
2021

Expansion of the Yeast Modular Cloning Toolkit for CRISPR-Based Applications, Genomic Integrations and Combinatorial Libraries

Maximilian Otto, Christos Skrekas, Michael Gossing et al
ACS Synthetic Biology. Vol. 10 (12), p. 3461-3474
Journal article
2021

Genome-scale metabolic network reconstruction of model animals as a platform for translational research

Hao Wang, Jonathan Robinson, Pinar Kocabas et al
Proceedings of the National Academy of Sciences of the United States of America. Vol. 118 (30)
Journal article
2021

BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq

Johan Gustafsson, Jonathan Robinson, Jens B Nielsen et al
Genome Biology. Vol. 22 (1)
Journal article
2020

DSAVE: Detection of misclassified cells in single-cell RNA-Seq data

Johan Gustafsson, Jonathan Robinson, Juan Salvador Inda Diaz et al
PLoS ONE. Vol. 15 (12 December)
Journal article
2020

An atlas of human metabolism

Jonathan Robinson, Pinar Kocabas, Hao Wang et al
Science signaling. Vol. 13 (624)
Journal article
2020

Sources of variation in cell-type RNA-Seq profiles

Johan Gustafsson, Felix Held, Jonathan Robinson et al
PLoS ONE. Vol. 15 (9), p. e0239495-
Journal article

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