Johan Gustafsson

Publications (15)
Projects (0)

Showing 15 publications

2024

Brain energy metabolism is optimized to minimize the cost of enzyme synthesis and transport

Johan Gustafsson, Jonathan Robinson, Henrik Zetterberg et al

Proceedings of the National Academy of Sciences of the United States of America. Vol. 121 (7)

Journal article

2024

Metabolic collaboration between cells in the tumor microenvironment has a negligible effect on tumor growth

Johan Gustafsson, Fariba Roshanzamir, Anders Hagnestål et al

Innovation. Vol. 5 (2)

Journal article

2024

Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0

Yu Chen, Johan Gustafsson, Albert Tafur Rangel et al

Nature Protocols. Vol. 19 (3), p. 629-667

Journal article

Show project

2024

Single-cell omics analysis with genome-scale metabolic modeling

Yu Chen, Johan Gustafsson, Jingyu Yang et al

Current Opinion in Biotechnology. Vol. 86

Review article

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2023

Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data

Johan Gustafsson, Petre Mihail Anton, Fariba Roshanzamir et al

Proceedings of the National Academy of Sciences of the United States of America. Vol. 120 (6)

Journal article

2023

Genome-scale metabolic models applied for human health and biopharmaceutical engineering

Feiran Li, Yu Chen, Johan Gustafsson et al

Quantitative Biology. Vol. 11 (4), p. 363-375

Review article

2022

Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data

Johan Gustafsson, Jonathan Robinson, Fariba Roshanzamir et al

Preprint

2022

Utilization of single-cell RNA-Seq and genome-scale modeling for investigating cancer metabolism

Johan Gustafsson

Doctoral thesis

2022

Cellular limitation of enzymatic capacity explains glutamine addiction in cancers

Johan Gustafsson, Fariba Roshanzamir, Anders Hagnestål et al

Preprint

2021

Expansion of the Yeast Modular Cloning Toolkit for CRISPR-Based Applications, Genomic Integrations and Combinatorial Libraries

Maximilian Otto, Christos Skrekas, Michael Gossing et al

ACS Synthetic Biology. Vol. 10 (12), p. 3461-3474

Journal article

2021

Genome-scale metabolic network reconstruction of model animals as a platform for translational research

Hao Wang, Jonathan Robinson, Pinar Kocabas et al

Proceedings of the National Academy of Sciences of the United States of America. Vol. 118 (30)

Journal article

2021

BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq

Johan Gustafsson, Jonathan Robinson, Jens B Nielsen et al

Genome Biology. Vol. 22 (1)

Journal article

2020

An atlas of human metabolism

Jonathan Robinson, Pinar Kocabas, Hao Wang et al

Science signaling. Vol. 13 (624)

Journal article

2020

DSAVE: Detection of misclassified cells in single-cell RNA-Seq data

Johan Gustafsson, Jonathan Robinson, Juan Salvador Inda Diaz et al

PLoS ONE. Vol. 15 (12 December)

Journal article

2020

Sources of variation in cell-type RNA-Seq profiles

Johan Gustafsson, Felix Held, Jonathan Robinson et al

PLoS ONE. Vol. 15 (9), p. e0239495-

Journal article

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