Benjamín José Sánchez

Doktorand at Systems and Synthetic Biology

I am a computational biologist, specialized in Systems Biology. I have interests in data science, mathematical modeling and challenging biological problems. Always learning from the scientific community!

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Showing 14 publications


Genome-scale modeling drives 70-fold improvement of intracellular heme production in Saccharomyces cerevisiae

Olena Ishchuk, Iván Domenzain Del Castillo Cerecer, Benjamín José Sánchez et al
Proceedings of the National Academy of Sciences of the United States of America. Vol. 119 (30)
Journal article

Proteome allocations change linearly with the specific growth rate of Saccharomyces cerevisiae under glucose limitation

Jianye Xia, Benjamín José Sánchez, Yu Chen et al
Nature Communications. Vol. 13 (1)
Journal article

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

Iván Domenzain Del Castillo Cerecer, Benjamín José Sánchez, Petre Mihail Anton et al
Nature Communications. Vol. 13 (1)
Journal article

Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiae

Benjamín José Sánchez, Petri-Jaan Lahtvee, Kate Campbell et al
Proteomics. Vol. 21 (6)
Journal article

MEMOTE for standardized genome-scale metabolic model testing

Christian Lieven, Moritz E. Beber, Brett G. Olivier et al
Nature Biotechnology. Vol. 38 (3), p. 272-276
Other text in scientific journal

Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism

J. Zhang, Søren D. Petersen, Tijana Radivojevic et al
Nature Communications. Vol. 11 (1)
Journal article

A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Hongzhong Lu, Feiran Li, Benjamín José Sánchez et al
Nature Communications. Vol. 10 (1)
Journal article

SLIMEr: Probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework

Benjamín José Sánchez, Feiran Li, Eduard Kerkhoven et al
BMC Systems Biology. Vol. 13 (1)
Journal article

Model-Assisted Fine-Tuning of Central Carbon Metabolism in Yeast through dCas9-Based Regulation

Raphael Ferreira, Christos Skrekas, Alex Hedin et al
ACS Synthetic Biology. Vol. 8 (11), p. 2457-2463
Journal article

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

Hao Wang, Simonas Marcisauskas, Benjamin José Sanchez Barja et al
PLoS Computational Biology. Vol. 14 (10), p. e1006541-
Journal article

Absolute Quantification of Protein and mRNA Abundances Demonstrate Variability in Gene-Specific Translation Efficiency in Yeast

Petri-Jaan Lahtvee, Benjamin José Sanchez Barja, Agata Smialowska et al
Cell Systems. Vol. 4 (5), p. 495-504.e5
Journal article

Improving the phenotype predictions of a yeast genome-scale metabolic model by incorporating enzymatic constraints

Benjamin José Sanchez Barja, C. Zhang, Avlant Nilsson et al
Molecular Systems Biology. Vol. 13 (8), p. Article no 935 -
Journal article

Genome scale models of yeast: towards standardized evaluation and consistent omic integration

Benjamin José Sanchez Barja, Jens B Nielsen
Integrative Biology (United Kingdom). Vol. 7 (8), p. 846-858
Journal article

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