Marina Axelson-Fisk

Professor at Applied Mathematics and Statistics

Marina Axelson-Fisk is a Professor in Mathematical Statistics. She works mainly within the field of Bioinformatics, with particular focus on stochastic models and algorithms for comparative genomics and cross-species gene finding. She was, among other things, involved in the initial comparative analyses of the human, mouse and rat in the Mouse and the Rat Sequencing Consortia. She is an associate member of the Linnaeus Centre for Marine Evolutionary Biology (CeMEB), where she is involved in the bioinformatics analysis of a number of newly sequenced Swedish coastal organisms.

For more information, see my homepage at http://www.math.chalmers.se/~marinaa/

Source: chalmers.se

Contact Details

Publications (23)
Projects (2)

Showing 23 publications

2023

Optimal subsampling designs

Henrik Imberg, Marina Axelson-Fisk, Johan Jonasson

Preprint

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2021

Early detection of sepsis using artificial intelligence: a scoping review protocol

Ivana Pepic, Robert Feldt, Lars Ljungström et al

Systematic Reviews. Vol. 10 (1)

Journal article

Show project

2020

A comprehensive survey of integron-associated genes present in metagenomes

Mariana Buongermino Pereira, Tobias Österlund, Martin Eriksson et al

BMC Genomics. Vol. 21 (1)

Journal article

2020

Optimal sampling in unbiased active learning

Henrik Imberg, Johan Jonasson, Marina Axelson-Fisk

Proceedings of Machine Learning Research. Vol. 108, p. 559-569

Paper in proceeding

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2018

Serine/Threonine Protein Kinases from Bacteria, Archaea and Eukarya Share a Common Evolutionary Origin Deeply Rooted in the Tree of Life

Ivan Andreas Stancik, Martin Sebastijan Šestak, Boyang Ji et al

Journal of Molecular Biology. Vol. 430 (1), p. 27-32

Journal article

2016

HattCI: Fast and Accurate attC site Identification Using Hidden Markov Models.

Mariana Buongermino Pereira, Mikael Wallroth, Erik Kristiansson et al

Journal of Computational Biology. Vol. 23 (11), p. 891-902

Journal article

2010

Comparative Gene Finding: Models, Algorithms and Implementation

Marina Axelson-Fisk

Book

2009

Conditional percolation on one-dimensional lattices

Marina Axelson-Fisk, Olle Häggström

Advances in Applied Probability. Vol. 41 (4), p. 3395-3415

Journal article

2009

Biased random walk in a one-dimensional percolation model

Marina Axelson-Fisk, Olle Häggström

Stochastic Processes and their Applications. Vol. 119 (10), p. 3395-3415

Journal article

2005

Gene finding in fungal genomes

Marina Axelson-Fisk, Per Sunnerhagen

Topics in Current Genetics: Comparative genomics using fungi as models, p. 1-28

Book chapter

2005

Pair hidden Markov models

Marina Alexandersson, Nicholas Bray, Lior Pachter

Encyklopedia of Genetics, Genomics, Proteomics and Bioinformatics

Book chapter

2005

The Cell Cycle

Marina Alexandersson

Branching Processes: Variation, Growth and Extinction of Populations, p. 218-225

Book chapter

2004

Accurate Identification of Novel Human Genes Through Simultaneous Gene Prediction in Human, Mouse and Rat

C. Dewey, J.Q. Wu, S. Cawley et al

Genome Research. Vol. 14 (4), p. 661-664

Journal article

2004

Bioinformatic identification of polymerizing and transmembrane mucins in the puffer fish Fugu rubripes

Tiange Lang, Marina Alexandersson, Gunnar C. Hansson et al

Glycobiology. Vol. 14 (6), p. 521-527

Journal article

2004

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

Marina Alexandersson, Rat Genome Sequencing Project Consortium

Nature. Vol. 428 (6982), p. 493-521

Journal article

2003

SLAM: Cross-species Gene Finding and Alignment with a Generalized Pair Hidden Markov Model

Marina Alexandersson, Simon Cawley, Lior Pachter

Genome Research. Vol. 13 (3), p. 496-502

Journal article

2003

Picking Alignments from (Steiner) Trees

Fumei Lam, Marina Alexandersson, Lior Pachter

Journal of Computational Biology. Vol. 10 (3-4), p. 509-520

Journal article

2003

SLAM webserver for comparative gene finding and alignment

Simon Cawley, Lior Pachter, Marina Alexandersson

Nucleic Acids Research. Vol. 31 (13), p. 3507-3509

Journal article

2002

Initial sequencing and comparative analysis of the mouse genome

Marina Alexandersson, Mouse Genome Sequencing Consortium

Nature. Vol. 420 (6915), p. 520-562

Journal article

2002

Applications of Generalized Pair Hidden Markov Models to Alignment and Gene Finding Problems

Lior Pachter, Marina Alexandersson, Simon Cawley

Journal of Computational Biology. Vol. 9 (2), p. 389-399

Journal article

2001

Existence of the Stable Birth Type Distribution in a General Branching Process Cell Cycle Model with Unequal Cell Division

Marina Alexandersson

Journal of Applied Probability. Vol. 38 (3), p. 673-685

Journal article

1998

Branching processes and cell populations

Marina Alexandersson

Licentiate thesis

1998

An Application of General Branching Processes to a Cell Cycle Model with Two Uncoupled Subcycles and Unequal Cell Division

Marina Alexandersson

International Journal of Applied Mathematics and Computer Science. Vol. 1, p. 131-145

Journal article

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Showing 2 research projects

2012–2015

Statistical Significance of Biological Sequences

Marina Axelson-Fisk Applied Mathematics and Statistics

Swedish Research Council (VR)

2011–2013

Next Generation Comparative Genomics

Marina Axelson-Fisk Applied Mathematics and Statistics

Swedish Research Council (VR)

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