David Bergenholm

Publications (16)
Projects (0)

Showing 16 publications

2021

Rational gRNA design based on transcription factor binding data

David Bergenholm, Yasaman Dabirian, Raphael Ferreira et al

Synthetic Biology. Vol. 6 (1)

Journal article

2020

A holistic view on transcriptional regulatory networks in S. cerevisiae: Implications and utilization

David Bergenholm

Doctoral thesis

2019

A bioinformatic pipeline to analyze ChIP-exo datasets

Christoph Sebastian Börlin, David Bergenholm, Petter Holland et al

Biology Methods and Protocols. Vol. 4 (1)

Journal article

2019

Saccharomyces cerevisiae displays a stable transcription start site landscape in multiple conditions

Christoph Sebastian Börlin, Nevena Cvetesic, Petter Holland et al

FEMS Yeast Research. Vol. 19 (2)

Journal article

2019

Construction of mini-chemostats for high-throughput strain characterization

David Bergenholm, Guodong Liu, David Hansson et al

Biotechnology and Bioengineering. Vol. 116 (5), p. 1029-1038

Journal article

2019

Predictive models of eukaryotic transcriptional regulation reveals changes in transcription factor roles and promoter usage between metabolic conditions

Petter Holland, David Bergenholm, Christoph Sebastian Börlin et al

Nucleic Acids Research. Vol. 47 (10), p. 4986-5000

Journal article

2018

Integrated analysis of the yeast NADPH-regulator Stb5 reveals distinct differences in NADPH requirements and regulation in different states of yeast metabolism

Liming Ouyang, Petter Holland, Hongzhong Lu et al

FEMS Yeast Research. Vol. 18 (8)

Journal article

2018

Modulation of saturation and chain length of fatty acids in Saccharomyces cerevisiae for production of cocoa butter-like lipids

David Bergenholm, Michael Gossing, Yongjun Wei et al

Biotechnology and Bioengineering. Vol. 115 (4), p. 932-942

Journal article

2018

Reconstruction of a Global Transcriptional Regulatory Network for Control of Lipid Metabolism in Yeast by Using Chromatin Immunoprecipitation with Lambda Exonuclease Digestion

David Bergenholm, Guodong Liu, Petter Holland et al

mSystems. Vol. 3 (4)

Journal article

2018

Expression of cocoa genes in Saccharomyces cerevisiae improves cocoa butter production

Yongjun Wei, David Bergenholm, Michael Gossing et al

Microbial Cell Factories. Vol. 17 (1)

Journal article

2017

Increasing cocoa butter-like lipid production of Saccharomyces cerevisiae by expression of selected cocoa genes

Yongjun Wei, Michael Gossing, David Bergenholm et al

AMB Express. Vol. 7 (1)

Journal article

2016

Engineering of synthetic, stress-responsive yeast promoters

Arun S. Rajkumar, Guodong Liu, David Bergenholm et al

Nucleic Acids Research. Vol. 44 (17), p. e136-

Journal article

2016

Genome-Wide Mapping of Binding Sites Reveals Multiple Biological Functions of the Transcription Factor Cst6p in Saccharomyces cerevisiae

Guodong Liu, David Bergenholm, Jens B Nielsen

mBio. Vol. 7 (3), p. e00559-16

Journal article

2015

Dominant negative inhibition data should be analyzed using mathematical modeling - Re-interpreting data from insulin signaling

David Jullesson, Rikard Johansson, Meenu R. Rajan et al

FEBS Journal. Vol. 282 (4), p. 788-

Journal article

2015

Electronic polymers in lipid membranes

P.K. Johansson, David Jullesson, A. Elfwing et al

Scientific Reports. Vol. 5

Journal article

2015

Impact of synthetic biology and metabolic engineering on industrial production of fine chemicals

David Jullesson, Florian David, B. F. Pfleger et al

Biotechnology Advances. Vol. 33 (7), p. 1395-1402

Review article

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