Iván Domenzain Del Castillo Cerecer

Publications (13)
Projects (0)

Showing 13 publications

2024

Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0

Yu Chen, Johan Gustafsson, Albert Tafur Rangel et al

Nature Protocols. Vol. 19 (3), p. 629-667

Journal article

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2023

A systems biology understanding of protein constraints in the metabolism of budding yeasts

Iván Domenzain Del Castillo Cerecer

Doctoral thesis

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2022

Genome-scale modeling drives 70-fold improvement of intracellular heme production in Saccharomyces cerevisiae

Olena Ishchuk, Iván Domenzain Del Castillo Cerecer, Benjamín José Sánchez et al

Proceedings of the National Academy of Sciences of the United States of America. Vol. 119 (30)

Journal article

2022

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

Iván Domenzain Del Castillo Cerecer, Benjamín José Sánchez, Petre Mihail Anton et al

Nature Communications. Vol. 13 (1)

Journal article

2022

Identification of a novel gene required for competitive growth at high temperature in the thermotolerant yeast Kluyveromyces marxianus

Noemi Montini, Tyler Doughty, Iván Domenzain Del Castillo Cerecer et al

Microbiology. Vol. 168 (3)

Journal article

2021

Evaluating accessibility, usability and interoperability of genome-scale metabolic models for diverse yeasts species

Iván Domenzain Del Castillo Cerecer, Feiran Li, Eduard Kerkhoven et al

FEMS Yeast Research. Vol. 21 (1)

Review article

2021

Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiae

Benjamín José Sánchez, Petri-Jaan Lahtvee, Kate Campbell et al

Proteomics. Vol. 21 (6)

Journal article

2021

A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism

Linnea Österberg, Iván Domenzain Del Castillo Cerecer, Julia Münch et al

PLoS Computational Biology. Vol. 17 (4)

Journal article

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2021

Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection

Hongzhong Lu, Feiran Li, Le Yuan et al

Molecular Systems Biology. Vol. 17 (10)

Journal article

2020

Stress-induced expression is enriched for evolutionarily young genes in diverse budding yeasts

Tyler Doughty, Iván Domenzain Del Castillo Cerecer, Aaron Millan-Oropeza et al

Nature Communications. Vol. 11 (1)

Journal article

2020

An atlas of human metabolism

Jonathan Robinson, Pinar Kocabas, Hao Wang et al

Science signaling. Vol. 13 (624)

Journal article

2019

A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Hongzhong Lu, Feiran Li, Benjamín José Sánchez et al

Nature Communications. Vol. 10 (1)

Journal article

2018

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

Hao Wang, Simonas Marcisauskas, Benjamin José Sanchez Barja et al

PLoS Computational Biology. Vol. 14 (10), p. e1006541-

Journal article

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