Zoran Konkoli

Associate Professor at Electronics Material and Systems

What do you do? That is the standard question we get during the conference dinner. I am sure that most of my colleagues have a prepared answer that they can recite without even thinking. I’ve always had a problem explaining to people what I do while standing on one foot, especially if I wanted to avoid sounding too arrogant or raising an eyebrow or two as people listen: My background is truly interdisciplinary which is strongly reflected in my current research activities.

Background:

I started as undergraduate in Physics at Zagreb University (1986-1991), obtained a doctoral degree in Theoretical Chemistry at Gothenburg University (1991-1996). After that I wanted to learn the statistical physics toolbox and wanted to move into statistical physics. This happened through the series of three post-docs: 1996-2002, studied diffusion-controlled reactions (with Henrik Johannesson, Chalmers, Institute of Theoretical Physics), moved to the Nordic Institute of Theoretical Physics (NORDITA, now moved from Copenhagen to Stockholm) where I studied protein folding with John Hertz. There I learned a great deal of spin-glass physics. In that period I continued investigating diffusion-controlled reactions. My last post-doc was with Peter Appel at the Applied Physics Department at Chalmers, where I looked into polymer-translocation problem, a remarkably challenging multi-scale modelling problem. There I stayed as assistant professor in Biological Physics (2002-2006) and this is where my truly independent scientific life started.

In 2007 I obtained a permanent position of Associate Professor at the Department of Microtechnology and Nanoscience – MC2. By that time I got my employment at MC2 it was clear to me that my research interest lie at the interface between condensed-matter theory, statistical physics, theoretical cell biology, and computer science. I decided to develop in that area being fully aware of the fact that it was the time to focus which, alas, I did not do since there are so many interesting things to look at.

My research interests are as follows:

- non-equilibrium statistical physics (diffusion-controlled reactions, polymer dynamics in “exotic” geometries; in principle anything to do with fluctuation and noise)

- theoretical cell biology (effects of noise on gene expression networks, complex formation dynamics, and HIV latency)

- (theoretical) computer science (unconventional computation: neuromorphic computing, reservoir computing, computing with memristor networks, advanced sensing systems; formal models of unconventional computation; the implementation problem – “can a rock compute?”)

Reserach hobbies:

- mathematics in general
- formal logic
- measure theory
- approximation theorems

Impact of my research results:

This is a hard one for every theoretician. I am proud of saying that I have a strong network of people I interact with. These people (1) inspire me, (2) teach me things I do not know about, (3) tell me when I am wrong, and most importantly (4) implement some of my theoretical ideas.

Source: chalmers.se
Image of Zoran Konkoli

Showing 44 publications

2024

Generalizing Wolfram’s Elementary Cellular Automata to Low-Density Networks: A Case Study in Text Classification

O. Johansson, Zoran Konkoli
International Journal of Unconventional Computing. Vol. 19 (2-3), p. 149-180
Journal article
2022

On Applications of Cellular Automata Memristor Networks for Reservoir Computing: Classifying Protein Toxicity

Ignacio Del Amo, Zoran Konkoli
International Journal of Unconventional Computing. Vol. 17 (1-2), p. 1-29
Journal article
2021

On the use of collaborative interactions for embedded sensing applications: Memristor networks as intelligent sensing substrates

Vasileios Athanasiou, Zoran Konkoli
AISB Convention 2021: Communication and Conversations
Paper in proceeding
2020

On Improving the Computing Capacity of Dynamical Systems

Vasileios Athanasiou, Zoran Konkoli
Scientific Reports. Vol. 10 (1)
Journal article
2020

On Sensing Principles Using Temporally Extended Bar Codes

Vasileios Athanasiou, Kiran Tadi, Mattan Hurevich et al
IEEE Sensors Journal. Vol. 20 (13), p. 6782-6791
Journal article
2019

On a generic theory of the organic electrochemical transistor dynamics

Vasileios Athanasiou, Sebastien Pecqueur, Dominique Vuillaume et al
Organic Electronics: physics, materials, applications. Vol. 72 (September), p. 39-49
Journal article
2019

On Mathematics of Universal Computation with Generic Dynamical Systems

Vasileios Athanasiou, Zoran Konkoli
From Parallel to Emergent Computing, p. 385-405
Book chapter
2019

Memristor Models for Early Detection of Sepsis in ICU patients

Vasileios Athanasiou, Zoran Konkoli
Computing in Cardiology. Vol. 2019-September
Paper in proceeding
2018

Reservoir computing with computational matter

Zoran Konkoli, Stefano Nichele, Matthew Dale et al
Natural Computing Series, p. 269-293
Book chapter
2018

On developing theory of reservoir computing for sensing applications: the state weaving environment echo tracker (SWEET) algorithm

Zoran Konkoli
International Journal of Parallel, Emergent and Distributed Systems. Vol. 33 (2), p. 121-143
Journal article
2018

On the efficient simulation of electrical circuits with constant phase elements: The Warburg element as a test case

Vasileios Athanasiou, Zoran Konkoli
International Journal of Circuit Theory and Applications. Vol. 46 (5), p. 1072-1090
Journal article
2018

On using reservoir computing for sensing applications: exploring environment-sensitive memristor networks

Vasileios Athanasiou, Zoran Konkoli
International Journal of Parallel, Emergent and Distributed Systems. Vol. 33 (4), p. 367-386
Journal article
2018

Molecules, semiconductors, light and information: Towards future sensing and computing paradigms

Kacper Pilarczyk, Ewelina Wlazlak, Dawid Przyczyna et al
Coordination Chemistry Reviews. Vol. 365, p. 23-40
Review article
2018

Philosophy of computation

Zoran Konkoli, Susan Stepney, Hajo Broersma et al
Natural Computing Series, p. 153-184
Book chapter
2017

East-West paths to unconventional computing

Andrew Adamatzky, Selim Akl, Mark Burgin et al
Progress in Biophysics and Molecular Biology. Vol. 131, p. 469-493
Review article
2015

A Perspective on Putnam’s Realizability Theorem in the Context of Unconventional Computation

Zoran Konkoli
International Journal of Unconventional Computing. Vol. 11 (1), p. 83-102
Journal article
2014

On Information Processing with Networks of Nano-Scale Switching Elements

Zoran Konkoli, Göran Wendin
International Journal of Unconventional Computing. Vol. 10 (5-6), p. 405-428
Journal article
2014

Forces on an attractive surface generated from a thermoresponsive polymer gel

Zoran Konkoli, Ilona Wegrzyn, Aldo Jesorka
AIP Advances. Vol. 4 (8), p. 087137 -
Journal article
2013

Thermal migration of molecular lipid films as a contactless fabrication strategy for lipid nanotube networks

Irep Gözen, Mehrnaz Shaali, Alar Ainla et al
Lab on a Chip - Miniaturisation for Chemistry and Biology. Vol. 13 (19), p. 3822-3826
Journal article
2013

Fluctuations in Tat copy number when it counts the most: a possible mechanism to battle the HIV latency

Zoran Konkoli, Aldo Jesorka
Theoretical Biology and Medical Modelling. Vol. 10 (1)
Journal article
2013

A generic simulator for large networks of memristive elements

Zoran Konkoli, Göran Wendin
Nanotechnology. Vol. 24 (38)
Journal article
2012

Aspects of computing with locally connected networks

V. Beiu, M. Calame, G. Cuniberti et al
AIP Conference Proceedings. Vol. 1479 (1), p. 1875-1879
Paper in proceeding
2012

Mathematical explanation of the predictive power of the X-level approach reaction noise estimator method

Zoran Konkoli
Theoretical Biology and Medical Modelling. Vol. 9 (1), p. 12-
Journal article
2012

Modelling reaction noise with a desired accuracy by using the X level Approach Reaction Noise Estimator (XARNES) method

Zoran Konkoli
Journal of Theoretical Biology. Vol. 305, p. 1-14
Journal article
2011

Safe uses of Hill's model: an exact comparison with the Adair model

Zoran Konkoli
Theoretical Biology and Medical Modelling. Vol. 8 (10)
Journal article
2011

Multiparticle reaction noise characteristics

Zoran Konkoli
Journal of Theoretical Biology. Vol. 271 (1), p. 78-86
Journal article
2011

Spontaneous noise reduction in a strongly cooperative reaction model

Zoran Konkoli
Journal of Theoretical Biology. Vol. 285 (1), p. 96-102
Journal article
2010

Controlling Chemistry in Dynamic Nanoscale Systems

Aldo Jesorka, Ludvig Lizana, Zoran Konkoli et al
Springer Series in Chemical Physics. Vol. 96, p. 449-468
Other conference contribution
2010

A danger of low copy numbers for inferring incorrect cooperativity degree

Zoran Konkoli
Theoretical Biology and Medical Modelling. Vol. 7 (1), p. 40-
Journal article
2010

Diffusion controlled reactions, fluctuation dominated kinetics, and living cell biochemistry

Zoran Konkoli
International Journal of Software and Informatics. Vol. accepted
Journal article
2010

Multiparticle diffusion limited kA->0 reaction in small volumes

Zoran Konkoli
Journal of Physics Condensed Matter. Vol. 22 (49)
Journal article
2010

Exact equilibrium state solution of an intracellular complex formation model: kA↔P reaction in a small volume

Zoran Konkoli
Physical Review E. Vol. 82 (4), p. 041922 -
Journal article
2009

Controlling Chemistry by Geometry in Nanoscale Systems

Ludvig Lizana, Zoran Konkoli, Brigitte Bauer et al
Annual Review of Physical Chemistry. Vol. 60, p. 449-468
Journal article
2009

Diffusion Controlled Reactions, Fluctuation Dominated Kinetics, and Living Cell Biochemistry

Zoran Konkoli
Electronic Proceedings in Theoretical Computer Science: Fifth Workshop on Developments in Computational Models - Computational Models From Nature; Rhodes, Greece
Paper in proceeding
2008

Transport Phenomena and Chemical Reactions in Nanoscale Surfactant Networks

Aldo Jesorka, Owe Orwar, Zoran Konkoli et al
Nanoreactors Medicine and Biotechnology
Book chapter
2007

Diffusion-controlled reactions in small and structured spaces as a tool for describing living cell biochemistry

Zoran Konkoli
Journal of Physics Condensed Matter. Vol. 19 (6), p. 1-12
Journal article
2007

Tunable filtering of chemical signals in a simple nanoscale reaction-diffusion network

Ludvig Lizana, Zoran Konkoli, Owe Orwar
Journal of Physical Chemistry B. Vol. 111 (22), p. 6214-6219
Journal article
2006

Controlling enzymatic reactions by geometry in a biomimetic nanoscale network

Kristin Sott, Tatsiana Lobovkina, Ludvig Lizana et al
Nano Letters. Vol. 6 (2), p. 209-214
Journal article
2005

Interplay between chemical reactions and trasport in structured spaces

Zoran Konkoli
Physical Review E. Vol. 72, p. 011917-
Journal article
2005

Diffusive transport in networks built of containers and tubes

Ludvig Lizana, Zoran Konkoli
Physical Review E. Vol. 72, p. 026305-
Journal article
2005

Controlled initiation of enzymatic reactions in micrometer-sized biomimetic compartments

A. Karlsson, Kristin Sott, Martin Markström et al
Journal of Physical Chemistry B. Vol. 109 (4), p. 1609-17
Journal article
2005

Controlled initiation of enzymatic reactions in micrometer-sized biomimetic compartments

A. Karlsson, K. Scott, M. Markstöm et al
Journal of Physical Chemistry B. Vol. 109, p. 1609-1617
Journal article
2004

Application of Bogolyubov's theory of weakly nonideal Bose gases to the A+A, A+B, B+B reaction-diffusion system

Zoran Konkoli
Physical Review E. Vol. 69, p. 011106-
Journal article
2004

Biomimetic nanoscale reactors and networks

Mattias Karlsson, M. Davidson, Roger Karlsson et al
Annual Review of Physical Chemistry. Vol. 55, p. 613-49
Journal article

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Showing 2 research projects

2015–2018

Reservoir Computing with Real-time Data for future IT (RECORD-IT)

Aldo Jesorka Physical Chemistry
Zoran Konkoli Electronics Material and Systems
Göran Wendin Electronics Material and Systems
European Commission (EC)

8 publications exist
2012–2015

SYnaptic MOlecular NEtworks for Bio-inspired Information Processing (SYMONE)

Göran Wendin Electronics Material and Systems
Zoran Konkoli Electronics Material and Systems
Per Hyldgaard Electronics Material and Systems
European Commission (EC)

2 publications exist
There might be more projects where Zoran Konkoli participates, but you have to be logged in as a Chalmers employee to see them.