Feiran Li

Visar 15 publikationer

2024

Yeast9: a consensus genome-scale metabolic model for S. cerevisiae curated by the community

Chengyu Zhang, Benjamín José Sánchez, Feiran Li et al
Molecular Systems Biology. Vol. 20 (10), p. 1134-1150
Artikel i vetenskaplig tidskrift
2024

Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0

Yu Chen, Johan Gustafsson, Albert Tafur Rangel et al
Nature Protocols. Vol. 19 (3), p. 629-667
Artikel i vetenskaplig tidskrift
2023

Genome-scale metabolic models applied for human health and biopharmaceutical engineering

Feiran Li, Yu Chen, Johan Gustafsson et al
Quantitative Biology. Vol. 11 (4), p. 363-375
Reviewartikel
2023

GotEnzymes: an extensive database of enzyme parameter predictions

Feiran Li, Yu Chen, Petre Mihail Anton et al
Nucleic Acids Research. Vol. 51 (D1), p. D583-D586
Artikel i vetenskaplig tidskrift
2022

Deep learning-based k(cat) prediction enables improved enzyme-constrained model reconstruction

Feiran Li, Le Yuan, Hongzhong Lu et al
Nature Catalysis. Vol. 5 (8), p. 662-672
Artikel i vetenskaplig tidskrift
2022

Filling gaps in metabolism using hypothetical reactions

Feiran Li
Proceedings of the National Academy of Sciences of the United States of America. Vol. 119 (49)
Övrig text i vetenskaplig tidskrift
2022

Genome-scale modeling of yeast metabolism: retrospectives and perspectives

Yu Chen, Feiran Li, Jens B Nielsen
FEMS Yeast Research. Vol. 22 (1)
Reviewartikel
2022

Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints

Feiran Li, Yu Chen, Qi Qi et al
Nature Communications. Vol. 13 (1)
Artikel i vetenskaplig tidskrift
2021

Evaluating accessibility, usability and interoperability of genome-scale metabolic models for diverse yeasts species

Iván Domenzain Del Castillo Cerecer, Feiran Li, Eduard Kerkhoven et al
FEMS Yeast Research. Vol. 21 (1)
Reviewartikel
2021

Yeast optimizes metal utilization based on metabolic network and enzyme kinetics

Yu Chen, Feiran Li, Jiwei Mao et al
Proceedings of the National Academy of Sciences of the United States of America. Vol. 118 (12)
Artikel i vetenskaplig tidskrift
2021

Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection

Hongzhong Lu, Feiran Li, Le Yuan et al
Molecular Systems Biology. Vol. 17 (10)
Artikel i vetenskaplig tidskrift
2020

Different routes of protein folding contribute to improved protein production in saccharomyces cerevisiae

Qi Qi, Feiran Li, Rosemary Yu et al
mBio. Vol. 11 (6), p. 1-12
Artikel i vetenskaplig tidskrift
2019

A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Hongzhong Lu, Feiran Li, Benjamín José Sánchez et al
Nature Communications. Vol. 10 (1)
Artikel i vetenskaplig tidskrift
2019

SLIMEr: Probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework

Benjamín José Sánchez, Feiran Li, Eduard Kerkhoven et al
BMC Systems Biology. Vol. 13 (1)
Artikel i vetenskaplig tidskrift

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