Saeed Shoaie

Publications (16)
Projects (0)

Showing 16 publications

2020

A systems biology approach for studying neurodegenerative diseases

Simon Lam, Abdulahad Bayraktar, C. Zhang et al

Drug Discovery Today. Vol. 25 (7), p. 1146-1159

Review article

2020

MEMOTE for standardized genome-scale metabolic model testing

Christian Lieven, Moritz E. Beber, Brett G. Olivier et al

Nature Biotechnology. Vol. 38 (3), p. 272-276

Other text in scientific journal

2019

Simplified Intestinal Microbiota to Study Microbe-Diet-Host Interactions in a Mouse Model

P. Kovatcheva-Datchary, Saeed Shoaie, Sunjae Lee et al

Cell Reports. Vol. 26 (13), p. 3772-3783.e6

Journal article

2018

Understanding the representative gut microbiota dysbiosis in metformin-treated Type 2 diabetes patients using genome-scale metabolic modeling

Dorines Rosario, Rui Benfeitas, G. Bidkhori et al

Frontiers in Physiology. Vol. 9

Journal article

2018

Challenges in modeling the human gut microbiome

Parizad Babaei, Saeed Shoaie, Boyang Ji et al

Nature Biotechnology. Vol. 36 (8), p. 682-686

Other text in scientific journal

2016

Systems biology analysis of hepatitis C virus infection reveals the role of copy number increases in regions of chromosome 1q in hepatocellular carcinoma metabolism

Ibrahim El-Semman, Adil Mardinoglu, Saeed Shoaie et al

Molecular BioSystems. Vol. 12 (5), p. 1496-1506

Journal article

2015

The gut microbiota modulates host amino acid and glutathione metabolism in mice

Adil Mardinoglu, Saeed Shoaie, Mattias Bergentall et al

Molecular Systems Biology. Vol. 11 (10), p. Article Number: 834-

Journal article

Show project

2015

Metabolic Modeling of the Gut Microbiome-Host Interactions and Meta’omics Integration

Saeed Shoaie

Doctoral thesis

2015

Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome

Saeed Shoaie, Pouyan Ghaffari Nouran, P. Kovatcheva-Datchary et al

Cell Metabolism. Vol. 22 (2), p. 320-331

Journal article

Show project

2015

Identifying anti-growth factors for human cancer cell lines through genome-scale metabolic modeling

Pouyan Ghaffari Nouran, Adil Mardinoglu, A. Asplund et al

Scientific Reports. Vol. 5, p. Art. no. 8183-

Journal article

2014

Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction

Ibrahim El-Semman, Fredrik Karlsson, Saeed Shoaie et al

BMC Systems Biology. Vol. 8 (41)

Journal article

2014

Elucidating the interactions between the human gut microbiota and its host through metabolic modeling

Saeed Shoaie, Jens B Nielsen

Frontiers in Genetics. Vol. 5 (APR)

Journal article

2013

Understanding the interactions between bacteria in the human gut through metabolic modeling

Saeed Shoaie, Fredrik Karlsson, Adil Mardinoglu et al

Scientific Reports. Vol. 3

Journal article

2013

The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum

Rasmus Ågren, Liming Liu, Saeed Shoaie et al

PLoS Computational Biology. Vol. 9 (3), p. e1002980-

Journal article

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2012

Dynamic (13) C-labelling experiments prove important differences in protein turnover rate between two Saccharomyces cerevisiae strains

Kuk-ki Hong, Jin Hou, Saeed Shoaie et al

FEMS Yeast Research. Vol. 12 (7), p. 741-747

Journal article

Show project

2012

Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in-silico evaluation of their potentials

Luis Caspeta-Guadarrama, Saeed Shoaie, Rasmus Ågren et al

BMC Systems Biology. Vol. 6 (24)

Journal article

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