Saeed Shoaie

Showing 25 publications

2024

Multi-omics analysis reveals the key factors involved in the severity of the Alzheimer's disease

Lingqi Meng, Han Jin, Burak Yulug et al
Alzheimers Research and Therapy. Vol. 16 (1), p. 213-
Journal article
2023

Combined metabolic activators improve cognitive functions in Alzheimer’s disease patients: a randomised, double-blinded, placebo-controlled phase-II trial

Burak Yulug, Ozlem Altay, Xiangyu Li et al
Translational Neurodegeneration. Vol. 12 (1)
Journal article
2022

Multiomics Analysis Reveals the Impact of Microbiota on Host Metabolism in Hepatic Steatosis

Mujdat Zeybel, Muhammad Arif, Xiangyu Li et al
Advanced Science. Vol. 9 (11)
Journal article
2022

Integrative functional analysis uncovers metabolic differences between Candida species

Neelu Begum, Sunjae Lee, Theo John Portlock et al
Communications Biology. Vol. 5 (1), p. 1013-
Journal article
2022

Prediction of drug candidates for clear cell renal cell carcinoma using a systems biology-based drug repositioning approach

Xiangyu Li, Koeun Shong, Woonghee Kim et al
EBioMedicine. Vol. 78
Journal article
2021

Combined Metabolic Activators Accelerates Recovery in Mild-to-Moderate COVID-19

Ozlem Altay, Muhammad Arif, Xiangyu Li et al
Advanced Science. Vol. 8 (17)
Journal article
2021

Advances in the Relationships Between Cow’s Milk Protein Allergy and Gut Microbiota in Infants

Yudie Yang, Xiaoqi Li, Ying Yang et al
Frontiers in Microbiology. Vol. 12
Review article
2021

Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients

Mujdat Zeybel, Ozlem Altay, Muhammad Arif et al
Molecular Systems Biology. Vol. 17 (10)
Journal article
2020

MEMOTE for standardized genome-scale metabolic model testing

Christian Lieven, Moritz E. Beber, Brett G. Olivier et al
Nature Biotechnology. Vol. 38 (3), p. 272-276
Other text in scientific journal
2020

A systems biology approach for studying neurodegenerative diseases

Simon Lam, Abdulahad Bayraktar, C. Zhang et al
Drug Discovery Today. Vol. 25 (7), p. 1146-1159
Review article
2019

Simplified Intestinal Microbiota to Study Microbe-Diet-Host Interactions in a Mouse Model

P. Kovatcheva-Datchary, Saeed Shoaie, Sunjae Lee et al
Cell Reports. Vol. 26 (13), p. 3772-3783.e6
Journal article
2018

Understanding the representative gut microbiota dysbiosis in metformin-treated Type 2 diabetes patients using genome-scale metabolic modeling

Dorines Rosario, Rui Benfeitas, G. Bidkhori et al
Frontiers in Physiology. Vol. 9 (JUN)
Journal article
2018

Challenges in modeling the human gut microbiome

Parizad Babaei, Saeed Shoaie, Boyang Ji et al
Nature Biotechnology. Vol. 36 (8), p. 682-686
Other text in scientific journal
2016

Systems biology analysis of hepatitis C virus infection reveals the role of copy number increases in regions of chromosome 1q in hepatocellular carcinoma metabolism

Ibrahim El-Semman, Adil Mardinoglu, Saeed Shoaie et al
Molecular BioSystems. Vol. 12 (5), p. 1496-1506
Journal article
2015

Identifying anti-growth factors for human cancer cell lines through genome-scale metabolic modeling

Pouyan Ghaffari Nouran, Adil Mardinoglu, A. Asplund et al
Scientific Reports. Vol. 5, p. Art. no. 8183-
Journal article
2015

Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome

Saeed Shoaie, Pouyan Ghaffari Nouran, P. Kovatcheva-Datchary et al
Cell Metabolism. Vol. 22 (2), p. 320-331
Journal article
2015

The gut microbiota modulates host amino acid and glutathione metabolism in mice

Adil Mardinoglu, Saeed Shoaie, Mattias Bergentall et al
Molecular Systems Biology. Vol. 11 (10), p. Article Number: 834-
Journal article
2014

Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction

Ibrahim El-Semman, Fredrik Karlsson, Saeed Shoaie et al
BMC Systems Biology. Vol. 8 (41)
Journal article
2014

Elucidating the interactions between the human gut microbiota and its host through metabolic modeling

Saeed Shoaie, Jens B Nielsen
Frontiers in Genetics. Vol. 5 (APR)
Journal article
2013

Understanding the interactions between bacteria in the human gut through metabolic modeling

Saeed Shoaie, Fredrik Karlsson, Adil Mardinoglu et al
Scientific Reports. Vol. 3
Journal article
2013

The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum

Rasmus Ågren, Liming Liu, Saeed Shoaie et al
PLoS Computational Biology. Vol. 9 (3), p. e1002980-
Journal article
2012

Dynamic (13) C-labelling experiments prove important differences in protein turnover rate between two Saccharomyces cerevisiae strains

Kuk-ki Hong, Jin Hou, Saeed Shoaie et al
FEMS Yeast Research. Vol. 12 (7), p. 741-747
Journal article
2012

Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in-silico evaluation of their potentials

Luis Caspeta-Guadarrama, Saeed Shoaie, Rasmus Ågren et al
BMC Systems Biology. Vol. 6 (24)
Journal article

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