Saeed Shoaie

A systems biology approach for studying neurodegenerative diseases

MEMOTE for standardized genome-scale metabolic model testing

2019

Simplified Intestinal Microbiota to Study Microbe-Diet-Host Interactions in a Mouse Model

2018

Understanding the representative gut microbiota dysbiosis in metformin-treated Type 2 diabetes patients using genome-scale metabolic modeling

Challenges in modeling the human gut microbiome

Systems biology analysis of hepatitis C virus infection reveals the role of copy number increases in regions of chromosome 1q in hepatocellular carcinoma metabolism

2015

The gut microbiota modulates host amino acid and glutathione metabolism in mice

Metabolic Modeling of the Gut Microbiome-Host Interactions and Meta’omics Integration

Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome

2015

Identifying anti-growth factors for human cancer cell lines through genome-scale metabolic modeling

2014

Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction

2014

Elucidating the interactions between the human gut microbiota and its host through metabolic modeling

2013

Understanding the interactions between bacteria in the human gut through metabolic modeling

2013

The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum

Dynamic (13) C-labelling experiments prove important differences in protein turnover rate between two Saccharomyces cerevisiae strains

2012

Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in-silico evaluation of their potentials