Jan Zrimec

Visar 16 publikationer

2022

Learning deep representations of enzyme thermal adaptation

Gang Li, Filip Buric, Jan Zrimec et al
Protein Science. Vol. 31 (12)
Artikel i vetenskaplig tidskrift
2022

Enhanced metabolism and negative regulation of ER stress support higher erythropoietin production in HEK293 cells

Rasool Saghaleyni, Magdalena Malm, Noah Moruzzi et al
Cell Reports. Vol. 39 (11)
Artikel i vetenskaplig tidskrift
2022

Data mining of Saccharomyces cerevisiae mutants engineered for increased tolerance towards inhibitors in lignocellulosic hydrolysates

Elena Cámara, Lisbeth Olsson, Jan Zrimec et al
Biotechnology Advances. Vol. 57
Reviewartikel
2022

Controlling gene expression with deep generative design of regulatory DNA

Jan Zrimec, Xiaozhi Fu, Muhammad Azam Sheikh et al
Nature Communications. Vol. 13 (1), p. 5099-
Artikel i vetenskaplig tidskrift
2021

Performance of Regression Models as a Function of Experiment Noise

Gang Li, Jan Zrimec, Boyang Ji et al
Bioinformatics and Biology Insights. Vol. 15
Artikel i vetenskaplig tidskrift
2021

Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends

Jan Zrimec, Mariia Kokina, Sara Jonasson et al
mBio. Vol. 12 (5)
Artikel i vetenskaplig tidskrift
2021

Learning the Regulatory Code of Gene Expression

Jan Zrimec, Filip Buric, Mariia Kokina et al
Frontiers in Molecular Biosciences. Vol. 8
Reviewartikel
2021

Bayesian genome scale modelling identifies thermal determinants of yeast metabolism

Gang Li, Yating Hu, Jan Zrimec et al
Nature Communications. Vol. 12 (1)
Artikel i vetenskaplig tidskrift
2021

Expanding functional protein sequence spaces using generative adversarial networks

Donatas Repecka, Vykintas Jauniskis, Laurynas Karpus et al
Nature Machine Intelligence. Vol. 3 (4), p. 324-333
Artikel i vetenskaplig tidskrift
2020

Multiple plasmid origin-of-transfer regions might aid the spread of antimicrobial resistance to human pathogens

Jan Zrimec
MicrobiologyOpen. Vol. 9 (12)
Artikel i vetenskaplig tidskrift
2020

Parallel Factor Analysis Enables Quantification and Identification of Highly Convolved Data-Independent-Acquired Protein Spectra

Filip Buric, Jan Zrimec, Aleksej Zelezniak
Patterns. Vol. 1 (9)
Artikel i vetenskaplig tidskrift
2020

Structural representations of DNA regulatory substrates can enhance sequence-based algorithms by associating functional sequence variants

Jan Zrimec
Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2020. Vol. 21 September 2020
Paper i proceeding
2020

Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure

Jan Zrimec, Christoph Sebastian Börlin, Filip Buric et al
Nature Communications. Vol. 11 (1)
Artikel i vetenskaplig tidskrift
2019

Determining the virulence properties of Escherichia coli ST131 containing bacteriocin-encoding plasmids using short-and long-read sequencing and comparing them with those of other E. Coli lineages

Ana Carolina da Cruz Campos, Francis M. Cavallo, Nathália L. Andrade et al
Microorganisms. Vol. 7 (11)
Artikel i vetenskaplig tidskrift
2019

Natural Microbial Communities Can Be Manipulated by Artificially Constructed Biofilms

Tomaž Rijavec, Jan Zrimec, Rob van Spanning et al
Advanced Science. Vol. 6 (22)
Artikel i vetenskaplig tidskrift
2018

DNA structure at the plasmid origin-of-Transfer indicates its potential transfer range

Jan Zrimec, Aleš Lapanje
Scientific Reports. Vol. 8 (1)
Artikel i vetenskaplig tidskrift

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