Francesco Gatto

Publications (31)
Projects (1)

Showing 31 publications

2023

Plasma and Urine Free Glycosaminoglycans as Monitoring and Predictive Biomarkers in Metastatic Renal Cell Carcinoma: A Prospective Cohort Study

Francesco Gatto, Sinisa Bratulic, Eric Jonasch et al

JCO PRECISION ONCOLOGY. Vol. 7

Journal article

Show project

2023

Leveraging high-resolution omics data for predicting responses and adverse events to immune checkpoint inhibitors

Angelo Limeta, Francesco Gatto, M. J. Herrgard et al

Computational and Structural Biotechnology Journal. Vol. 21, p. 3912-3919

Review article

2022

Analysis of normal levels of free glycosaminoglycans in urine and plasma in adults

Sinisa Bratulic, Angelo Limeta, F. Maccari et al

Journal of Biological Chemistry. Vol. 298 (2)

Journal article

2022

Noninvasive detection of any-stage cancer using free glycosaminoglycans

Sinisa Bratulic, Angelo Limeta, Saeed Dabestani et al

Proceedings of the National Academy of Sciences of the United States of America. Vol. 119 (50)

Journal article

2022

Plasma and Urine Free Glycosaminoglycans as Monitoring Biomarkers in Nonmetastatic Renal Cell Carcinoma—A Prospective Cohort Study

Francesco Gatto, Saeed Dabestani, Sinisa Bratulic et al

European Urology Open Science. Vol. 42, p. 30-39

Journal article

2021

The specificity of the malarial VAR2CSA protein for chondroitin sulfate depends on 4-O-sulfation and ligand accessibility

Charlotte B. Spliid, Alejandro Gomez Toledo, Patience Sanderson et al

Journal of Biological Chemistry. Vol. 297 (6)

Journal article

2021

Urine free glycosaminoglycans as monitoring biomarkers in confined renal cell carcinoma - A prospective observational study

Francesco Gatto, Sinisa Bratulic, U. Stierner et al

European Urology. Vol. 79, p. S900-S900

Other conference contribution

2021

The Translational Status of Cancer Liquid Biopsies

Sinisa Bratulic, Francesco Gatto, Jens B Nielsen

Regenerative Engineering and Translational Medicine. Vol. 7 (3), p. 312-352

Journal article

2021

Analytical performance of a standardized kit for mass spectrometry-based measurements of human glycosaminoglycans

Davide Tamburro, Sinisa Bratulic, Souad Abou Shameh et al

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences. Vol. 1177

Journal article

2020

Exercise-Mediated Lowering of Glutamine Availability Suppresses Tumor Growth and Attenuates Muscle Wasting

K. S. Pedersen, Francesco Gatto, Bo Zerahn et al

iScience. Vol. 23 (4)

Journal article

2020

Meta-analysis of the gut microbiota in predicting response to cancer immunotherapy in metastatic melanoma

Angelo Limeta, Boyang Ji, Max Levin et al

JCI Insight. Vol. 5 (23)

Journal article

2020

Purine metabolism regulates DNA repair and therapy resistance in glioblastoma

Weihua Zhou, Yangyang Yao, Andrew J. Scott et al

Nature Communications. Vol. 11 (1)

Journal article

2020

A simple method for detecting oncofetal chondroitin sulfate glycosaminoglycans in bladder cancer urine

Thomas Mandel Clausen, Gunjan Kumar, Emilie K. Ibsen et al

Cell Death Discovery. Vol. 6 (1)

Journal article

2020

Pan-cancer analysis of the metabolic reaction network

Francesco Gatto, Raphael Ferreira, Jens B Nielsen

Metabolic Engineering. Vol. 57, p. 51-62

Journal article

2018

Plasma Glycosaminoglycans as Diagnostic and Prognostic Biomarkers in Surgically Treated Renal Cell Carcinoma

Francesco Gatto, Kyle A. Blum, Seyedeh Shaghayegh Hosseini et al

European Urology Oncology. Vol. 1 (5), p. 364-377

Journal article

2018

Recon3D enables a three-dimensional view of gene variation in human metabolism

Elizabeth Brunk, S. Sahoo, Daniel C. Zielinski et al

Nature Biotechnology. Vol. 36 (3), p. 272-281

Journal article

2017

Human protein secretory pathway genes are expressed in a tissue-specific pattern to match processing demands of the secretome

Amir Feizi, Francesco Gatto, Mathias Uhlen et al

npj Systems Biology and Applications. Vol. 3 (1)

Journal article

2017

Exploiting off-targeting in guide-RNAs for CRISPR systems for simultaneous editing of multiple genes

Raphael Ferreira, Francesco Gatto, Jens B Nielsen

FEBS Letters. Vol. 591 (20), p. 3288-3295

Journal article

2017

Absolute Quantification of Protein and mRNA Abundances Demonstrate Variability in Gene-Specific Translation Efficiency in Yeast

Petri-Jaan Lahtvee, Benjamin José Sanchez Barja, Agata Smialowska et al

Cell Systems. Vol. 4 (5), p. 495-504.e5

Journal article

2016

Glycosaminoglycan Profiling in Patients' Plasma and Urine Predicts the Occurrence of Metastatic Clear Cell Renal Cell Carcinoma

Francesco Gatto, N. Volpi, H. Nilsson et al

Cell Reports. Vol. 15 (8), p. 1822-1836

Journal article

2016

Prognostic Value of Plasma and Urine glycosaminoglycan scores in clear cell renal cell carcinoma

Francesco Gatto, M. Maruzzo, Cristina Magro et al

Frontiers in Oncology. Vol. 6 (NOV), p. Art. no. 253-

Journal article

2016

Systematic Analysis Reveals that Cancer Mutations Converge on Deregulated Metabolism of Arachidonate and Xenobiotics

Francesco Gatto, A. Schulze, Jens B Nielsen

Cell Reports. Vol. 16 (3), p. 878-895

Journal article

2016

Systematic analysis of overall survival and interactions between tumor mutations and drug treatment

Francesco Gatto, Jens B Nielsen

Journal of Hematology and Oncology. Vol. 9 (1)

Journal article

2016

In search for symmetries in the metabolism of cancer

Francesco Gatto, Jens B Nielsen

Wiley Interdisciplinary Reviews: Systems Biology and Medicine. Vol. 8 (1), p. 23-35

Review article

2016

Glycosaminoglycan profiling in plasma and urine as a diagnostic and prognostic biomarker of clear cell renal cell carcinoma

Francesco Gatto, M. Maruzzo, U. Stierner et al

BJU International. Vol. 118, p. 12-13

Other conference contribution

2015

The origin of symmetry in the metabolism of cancer – From systems biology to translational medicine

Francesco Gatto

Doctoral thesis

2015

Breast cyst fluid heparan sulphate is distinctively N-sulphated depending on apocrine or flattened type

F. Mannello, F. Maccari, D. Ligi et al

Cell Biochemistry and Function. Vol. 33 (3), p. 128-133

Journal article

2015

Flux balance analysis predicts essential genes in clear cell renal cell carcinoma metabolism

Francesco Gatto, H. Miess, A. Schulze et al

Scientific Reports. Vol. 5, p. Art. no. 10738-

Journal article

2014

Kiwi: a tool for integration and visualization of network topology and gene-set analysis

Leif Wigge, Francesco Gatto, Jens B Nielsen

BMC Bioinformatics. Vol. 15 (1)

Journal article

2014

Chromosome 3p loss of heterozygosity is associated with a unique metabolic network in clear cell renal carcinoma

Francesco Gatto, Intawat Nookaew, Jens B Nielsen

Proceedings of the National Academy of Sciences of the United States of America. Vol. 111 (9), p. E866-E875

Journal article

2013

Genome-scale modeling of human metabolism - a systems biology approach.

Adil Mardinoglu, Francesco Gatto, Jens B Nielsen

Biotechnology journal. Vol. 8 (9), p. 985-996

Review article

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Showing 1 research projects

2016–2017

Aurora Life Sciences

Francesco Gatto Systems and Synthetic Biology

Region Västra Götaland

VINNOVA

1 publication exists

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