Francesco Gatto

Showing 18 publications

2020

Pan-cancer analysis of the metabolic reaction network

Francesco Gatto, Raphael Ferreira, Jens B Nielsen
Metabolic Engineering. Vol. 57, p. 51-62
Journal article
2018

Recon3D enables a three-dimensional view of gene variation in human metabolism

Elizabeth Brunk, S. Sahoo, Daniel C. Zielinski et al
Nature Biotechnology. Vol. 36 (3), p. 272-281
Journal article
2018

Plasma Glycosaminoglycans as Diagnostic and Prognostic Biomarkers in Surgically Treated Renal Cell Carcinoma

Francesco Gatto, Kyle A. Blum, Seyedeh Shaghayegh Hosseini et al
European Urology Oncology. Vol. 1 (5), p. 364-377
Journal article
2017

Exploiting off-targeting in guide-RNAs for CRISPR systems for simultaneous editing of multiple genes

Raphael Ferreira, Francesco Gatto, Jens B Nielsen
FEBS Letters. Vol. 591 (20), p. 3288-3295
Journal article
2017

Absolute Quantification of Protein and mRNA Abundances Demonstrate Variability in Gene-Specific Translation Efficiency in Yeast

Petri-Jaan Lahtvee, Benjamin José Sanchez Barja, Agata Smialowska et al
Cell Systems. Vol. 4 (5), p. 495-504.e5
Journal article
2017

Human protein secretory pathway genes are expressed in a tissue-specific pattern to match processing demands of the secretome

Amir Feizi, Francesco Gatto, Mathias Uhlen et al
npj Systems Biology and Applications. Vol. 3 (1)
Journal article
2016

In search for symmetries in the metabolism of cancer

Francesco Gatto, Jens B Nielsen
Wiley Interdisciplinary Reviews: Systems Biology and Medicine. Vol. 8 (1), p. 23-35
Journal article
2016

Glycosaminoglycan Profiling in Patients' Plasma and Urine Predicts the Occurrence of Metastatic Clear Cell Renal Cell Carcinoma

Francesco Gatto, N. Volpi, H. Nilsson et al
Cell Reports. Vol. 15 (8), p. 1822-1836
Journal article
2016

Systematic Analysis Reveals that Cancer Mutations Converge on Deregulated Metabolism of Arachidonate and Xenobiotics

Francesco Gatto, A. Schulze, Jens B Nielsen
Cell Reports. Vol. 16 (3), p. 878-895
Journal article
2016

Prognostic Value of Plasma and Urine glycosaminoglycan scores in clear cell renal cell carcinoma

Francesco Gatto, M. Maruzzo, Cristina Magro et al
Frontiers in Oncology. Vol. 6 (NOV), p. Art. no. 253-
Journal article
2016

Systematic analysis of overall survival and interactions between tumor mutations and drug treatment

Francesco Gatto, Jens B Nielsen
Journal of Hematology and Oncology. Vol. 9 (1)
Journal article
2016

Glycosaminoglycan profiling in plasma and urine as a diagnostic and prognostic biomarker of clear cell renal cell carcinoma

Francesco Gatto, M. Maruzzo, U. Stierner et al
BJU International. Vol. 118, p. 12-13
Conference contribution
2015

Breast cyst fluid heparan sulphate is distinctively N-sulphated depending on apocrine or flattened type

F. Mannello, F. Maccari, D. Ligi et al
Cell Biochemistry and Function. Vol. 33 (3), p. 128-133
Journal article
2015

Flux balance analysis predicts essential genes in clear cell renal cell carcinoma metabolism

Francesco Gatto, H. Miess, A. Schulze et al
Scientific Reports. Vol. 5, p. Art. no. 10738-
Journal article
2014

Chromosome 3p loss of heterozygosity is associated with a unique metabolic network in clear cell renal carcinoma

Francesco Gatto, Intawat Nookaew, Jens B Nielsen
Proceedings of the National Academy of Sciences of the United States of America. Vol. 111 (9), p. E866-E875
Journal article
2014

Kiwi: a tool for integration and visualization of network topology and gene-set analysis

Leif Wigge, Francesco Gatto, Jens B Nielsen
BMC Bioinformatics. Vol. 15 (1)
Journal article
2013

Genome-scale modeling of human metabolism - a systems biology approach.

Adil Mardinoglu, Francesco Gatto, Jens B Nielsen
Biotechnology journal. Vol. 8
Journal article

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Showing 1 research projects

2016–2017

Aurora Life Sciences

Francesco Gatto Systems and Synthetic Biology
Region Västra Götaland
VINNOVA

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