Anna Johnning

Publications (27)
Projects (0)

Showing 27 publications

2023

Extensive screening reveals previously undiscovered aminoglycoside resistance genes in human pathogens

David Lund, Roelof Dirk Coertze, Marcos Parras Moltó et al

Communications Biology. Vol. 6 (1)

Journal article

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2023

Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes

Juan Salvador Inda Diaz, David Lund, Marcos Parras Moltó et al

Microbiome. Vol. 11 (1), p. 44-

Journal article

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2023

Strain-level bacterial typing directly from patient samples using optical DNA mapping

My Nyblom, Anna Johnning, Karolin Frykholm et al

Communications Medicine. Vol. 3 (31)

Journal article

2023

Outbreak of OXA-48-producing Enterobacteriaceae in a neonatal intensive care unit in Western Sweden

Erika Tång Hallbäck, Anna Johnning, Sofia Myhrman et al

European Journal of Clinical Microbiology and Infectious Diseases. Vol. 42 (5), p. 597-605

Journal article

2022

Large-scale characterization of the macrolide resistome reveals high diversity and several new pathogen-associated genes

David Lund, Nicolas Kieffer, Marcos Parras Moltó et al

Microbial Genomics. Vol. 8 (1)

Journal article

2021

Combining dense and sparse labeling in optical DNA mapping

Erik Torstensson, Gaurav Goyal, Anna Johnning et al

PLoS ONE. Vol. 16 (11 November)

Journal article

2021

An updated phylogeny of the metallo-β-lactamases

Fanny Berglund, Anna Johnning, D. G.Joakim Larsson et al

Journal of Antimicrobial Chemotherapy. Vol. 76 (1), p. 117-123

Journal article

2021

Nonlinear Mixed Effects Modeling of Deterministic and Stochastic Dynamical Systems in Wolfram Mathematica

Jacob Leander, Joachim Almquist, Anna Johnning et al

IFAC-PapersOnLine. Vol. 54 (7), p. 409-414

Paper in proceeding

2020

Discovery of Species-unique Peptide Biomarkers of Bacterial Pathogens by Tandem Mass Spectrometry-based Proteotyping

Roger Karlsson, Annika Thorsell, Margarita Gomila et al

Molecular and Cellular Proteomics. Vol. 19 (3), p. 518-528

Journal article

2020

Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance genes

Fanny Berglund, Maria Elisabeth Böhm, Anton Martinsson et al

Microbial Genomics. Vol. 6 (11)

Journal article

2020

Cultivation-Free Typing of Bacteria Using Optical DNA Mapping

Vilhelm Müller, My Nyblom, Anna Johnning et al

ACS Infectious Diseases. Vol. 6 (5), p. 1076-1084

Journal article

2020

NLMEModeling: A Wolfram Mathematica Package for Nonlinear Mixed Effects Modeling of Dynamical Systems

Jacob Leander, Joachim Almquist, Anna Johnning et al

Preprint

2019

Parameter Estimation for Nonlinear Mixed Effects Models Implemented in Mathematica

Jacob Leander, Joachim Almquist, Helga Kristín Ólafsdóttir et al

Conference poster

2019

Bacterial identification by optical mapping of genomic DNA in nanofluidic channels

My Nyblom, Vilhelm Müller, Anna Johnning et al

23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2019, p. 821-822

Paper in proceeding

2018

The resistomes of six carbapenem-resistant pathogens - a critical genotype-phenotype analysis

Anna Johnning, N. Karami, Erika Tång Hallbäck et al

Microbial Genomics. Vol. 4 (11)

Journal article

2017

Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics

Fredrik Boulund, R. Karlsson, L. Gonzales-Siles et al

Molecular and Cellular Proteomics. Vol. 16 (6), p. 1052-1063

Journal article

2016

Draft genome sequence of extended-spectrum-β-lactamase-producing Escherichia coli strain CCUG 62462, isolated from a urine sample

Anna Johnning, Hedvig E Jakobsson, Fredrik Boulund et al

Genome Announcements. Vol. 4 (6), p. e01382-16

Journal article

2016

Strategies to improve usability and preserve accuracy in biological sequence databases

Johan Bengtsson-Palme, Fredrik Boulund, Robert Edström et al

Proteomics. Vol. 16 (18), p. 2454-2460

Journal article

2015

Quinolone resistance mutations in the faecal microbiota of Swedish travellers to India

Anna Johnning, Erik Kristiansson, Martin Angelin et al

BMC Microbiology. Vol. 15 (1)

Journal article

2015

Isolation of novel IncA/C and IncN fluoroquinolone resistance plasmids from an antibiotic-polluted lake

Carl-Fredrik Flach, Anna Johnning, Ida Nilsson et al

Journal of Antimicrobial Chemotherapy. Vol. 70 (10), p. 2709-2717

Journal article

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2015

Resistance Mutations in gyrA and parC are Common in Escherichia Communities of both Fluoroquinolone-Polluted and Uncontaminated Aquatic Environments

Anna Johnning, Erik Kristiansson, Jerker Fick et al

Frontiers in Microbiology. Vol. 6 (DEC), p. 1355-

Journal article

2014

Fluoroquinolone resistance in the environment and the human gut – Analysis of bacterial DNA sequences to explore the underlying genetic mechanisms

Anna Johnning

Doctoral thesis

2013

Acquired genetic mechanisms of a multiresistant bacterium isolated from a treatment plant receiving wastewater from antibiotic production.

Anna Johnning, Edward R.B. Moore, Liselott Svensson-Stadler et al

Applied and Environmental Microbiology. Vol. 79 (23), p. 7256-63

Journal article

2012

A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences

Fredrik Boulund, Anna Johnning, Mariana Buongermino Pereira et al

BMC Genomics. Vol. 13 (1), p. 695-

Journal article

2011

The genome of an extensively drug-resistant bacterium isolated from a wastewater treatment plant receiving effluent from antibiotic manufacturing

Anna Johnning, Erik Kristiansson, Y. Shouche et al

SETAC Europe 21st Annual Meeting; Ecosystem Protection in a Sustainable World: A challenge for Science and Regulation 15-19 May 2011, p. 212-

Conference poster

2011

Exploring the metagenomes of environmental antibiotic hotspots to identify resistance factors that we may face in the clinic tomorrow

D. G. Joakim Larsson, Anders Janzon, Anna Johnning et al

SETAC Europe 21st Annual Meeting; Ecosystem Protection in a Sustainable World: A challenge for Science and Regulation 15-19 May 2011, p. 38-

Conference poster

2010

Whole genome sequencing of a multiresistant bacterium isolated from a wastewater treatment plant receiving effluent from antibiotic drug manufactureing

Anna Johnning, Erik Kristiansson, Y.S Shouche et al

35th Congress of the Federation of European Biochemical Societies (FEBS), Gothenburg, June 26 - July 1, 2010. Vol. 277 (Suppl 1), p. 105-

Conference poster

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