Lena Nyberg

Publications (31)
Projects (0)

Showing 31 publications

2018

Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction approach

Albertas Dvirnas, C. Pichler, Callum L. Stewart et al

PLoS ONE. Vol. 13 (3)

Journal article

2018

The resistomes of six carbapenem-resistant pathogens - a critical genotype-phenotype analysis

Anna Johnning, N. Karami, Erika Tång Hallbäck et al

Microbial Genomics. Vol. 4 (11)

Journal article

2018

Identification and DNA annotation of a plasmid isolated from Chromobacterium violaceum

Daniel C. Lima, Lena Nyberg, Fredrik Westerlund et al

Scientific Reports. Vol. 8 (1)

Journal article

2017

Exploring DNA-protein interactions on the single DNA molecule level using nanofluidic tools

Karolin Frykholm, Lena Nyberg, Fredrik Westerlund

Integrative Biology (United Kingdom). Vol. 9 (8), p. 650-661

Journal article

2017

Applications of optical DNA mapping in microbiology

D. Bogas, Lena Nyberg, R. Pacheco et al

BioTechniques. Vol. 62 (6), p. 255-267

Review article

2016

Rapid Tracing of Resistance Plasmids in a Nosocomial Outbreak Using Optical DNA Mapping

Vilhelm Müller, N. Karami, Lena Nyberg et al

ACS Infectious Diseases. Vol. 2 (5), p. 322-328

Journal article

2016

Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping.

Vilhelm Müller, Fredrika Rajer, Karolin Frykholm et al

Scientific Reports. Vol. 6, p. 37938-

Journal article

2016

Detailed characterization of plasmids carrying resistance genes using optical DNA mapping

Vilhelm Müller, Lena Nyberg, Mahmood Saair Quaderi et al

20th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2016, p. 1561-1562

Paper in proceeding

2016

Rapid identification of intact bacterial resistance plasmids via optical mapping of single DNA molecules

Lena Nyberg, Mahmood Saair Quaderi, Gustav Emilsson et al

Scientific Reports. Vol. 6

Journal article

2015

Nanoconfined Circular and Linear DNA: Equilibrium Conformations and Unfolding Kinetics

Mohammadreza Alizadehheidari, Erik Werner, C. Noble et al

Macromolecules. Vol. 48 (3), p. 871-878

Journal article

2015

Plaque-associated lipids in Alzheimer's diseased brain tissue visualized by nonlinear microscopy

Juris Kiskis, Helen Fink, Lena Nyberg et al

Scientific Reports. Vol. 5, p. Art. no. 13489-

Journal article

2015

Extension of nanoconfined DNA: quantitative comparison between experiment and theory

Vitalii Iarko, Erik Werner, Lena Nyberg et al

Physical Review E. Vol. 92 (6), p. Art. Nr. 062701-

Journal article

2015

Unfolding of nanoconfined circular DNA

Mohammadreza Alizadehheidari, Erik Werner, C Noble et al

Biophysical Journal. Vol. 108 (2 Supplement 1), p. 231A-231A

Magazine article

2015

Development of methods for optical mapping of nanoconfined DNA

Lena Nyberg

Doctoral thesis

2015

Optical mapping of single DNA molecules in nanochannels: A novel method for identification and characterization of antibiotic resistance

Lena Nyberg, Gustav Emilsson, A. Nilsson et al

18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014, p. 1045-1047

Paper in proceeding

2015

Bacteriophage strain typing by rapid single molecule analysis

A. Grunwald, M. Dahan, A. Giesbertz et al

Nucleic Acids Research. Vol. 43 (18), p. e117-

Journal article

2015

Fast size-determination of intact bacterial plasmids using nanofluidic channels

Karolin Frykholm, Lena Nyberg, E. Lagerstedt et al

Lab on a Chip - Miniaturisation for Chemistry and Biology. Vol. 15 (13), p. 2739-2743

Journal article

2014

CARS microscopy of Alzheimer's diseased brain tissue

Annika Enejder, Juris Kiskis, Helen Fink et al

Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 8948

Paper in proceeding

2014

Competitive binding-based optical DNA mapping for fast identification of bacteria - multi-ligand transfer matrix theory and experimental applications on Escherichia coli

A. Nilsson, Gustav Emilsson, Lena Nyberg et al

Nucleic Acids Research. Vol. 42 (15), p. e118-

Journal article

2014

Nanoconfined Circular DNA

Mohammadreza Alizadehheidari, E. Werner, C. Noble et al

Other conference contribution

2014

Nanoconfined circular DNA

Mohammadreza Alizadehheidari, E. Werner, C. Noble et al

18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014, p. 1353-1355

Paper in proceeding

2013

Development of Methods for Single-Molecule Studies of DNA in Nanofluidic Channels

Lena Nyberg

Licentiate thesis

2013

Assessing How Cationic Intercalators Affect DNA using Nanofluidic Channels

Lena Nyberg, F. Persson, Björn Åkerman et al

Biophysical Journal. Vol. 104 (2), p. 165A-

Conference poster

2013

Heterogeneous staining: a tool for studies of how fluorescent dyes affect the physical properties of DNA

Lena Nyberg, Fredrik Persson, Björn Åkerman et al

Nucleic Acids Research. Vol. 41 (19), p. articlenr e184-

Journal article

2013

What do photons do to fluorescently stained DNA in confinement?

J. P. Beech, Lena Nyberg, Joachim Fritzsche et al

17th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2013; Freiburg; Germany; 27 October 2013 through 31 October 2013. Vol. 1, p. 5-7

Paper in proceeding

2013

Identifying bacteria using DNA binding maps

Gustav Emilsson, A. Nilsson, Lena Nyberg et al

17th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2013; Freiburg; Germany; 27 October 2013 through 31 October 2013. Vol. 1, p. 473-475

Paper in proceeding

2013

Assessing how cationic intercalators affect DNA using nanofluidic channels

Lena Nyberg, F. Persson, Björn Åkerman et al

European Biophysics Journal. Vol. 42 (S1), p. S202-S202

Magazine article

2012

A single-step competitive binding assay for mapping of single DNA molecules

Lena Nyberg, Fredrik Persson, J. Berg et al

Biochemical and Biophysical Research Communications. Vol. 417 (1), p. 404-408

Journal article

2010