C. Zhang

Publications (36)
Projects (0)

Showing 36 publications

2022

Prediction of drug candidates for clear cell renal cell carcinoma using a systems biology-based drug repositioning approach

Xiangyu Li, Koeun Shong, Woonghee Kim et al

EBioMedicine. Vol. 78

Journal article

2022

A Gene Co-Expression Network-Based Drug Repositioning Approach Identifies Candidates for Treatment of Hepatocellular Carcinoma

Meng Yuan, Koeun Shong, Xiangyu Li et al

Cancers. Vol. 14 (6)

Journal article

2022

Multiomics Analysis Reveals the Impact of Microbiota on Host Metabolism in Hepatic Steatosis

Mujdat Zeybel, Muhammad Arif, Xiangyu Li et al

Advanced Science. Vol. In Press

Journal article

2021

INetModels 2.0: An interactive visualization and database of multi-omics data

Muhammad Arif, C. Zhang, Xiangyu Li et al

Nucleic Acids Research. Vol. 49 (W1), p. W271-W276

Journal article

2021

Combined Metabolic Activators Accelerates Recovery in Mild-to-Moderate COVID-19

Ozlem Altay, Muhammad Arif, Xiangyu Li et al

Advanced Science. Vol. 8 (17)

Journal article

2021

Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients

Mujdat Zeybel, Ozlem Altay, Muhammad Arif et al

Molecular Systems Biology. Vol. 17 (10)

Journal article

2021

Informing Pharmacokinetic Models With Physiological Data: Oral Population Modeling of L-Serine in Humans

Jim Bosley, Elias Björnson, C. Zhang et al

Frontiers in Pharmacology. Vol. 12

Journal article

2021

A network-based approach reveals the dysregulated transcriptional regulation in non-alcoholic liver disease

Hong Yang, Muhammad Arif, Meng Yuan et al

ISCIENCE. Vol. 24 (11)

Journal article

2021

Stratification of patients with clear cell renal cell carcinoma to facilitate drug repositioning

Xiangyu Li, Woonghee Kim, Kajetan Juszczak et al

iScience. Vol. 24 (7)

Journal article

2020

A systems biology approach for studying neurodegenerative diseases

Simon Lam, Abdulahad Bayraktar, C. Zhang et al

Drug Discovery Today. Vol. 25 (7), p. 1146-1159

Review article

2020

The acute effect of metabolic cofactor supplementation: a potential therapeutic strategy against non-alcoholic fatty liver disease

C. Zhang, Elias Björnson, Muhammad Arif et al

Molecular Systems Biology. Vol. 16 (4)

Journal article

2020

Classification of clear cell renal cell carcinoma based on PKM alternative splicing

Xiangyu Li, Beste Turanli, Kajetan Juszczak et al

Heliyon. Vol. 6 (2)

Journal article

2019

Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis

Rui Benfeitas, G. Bidkhori, B. Mukhopadhyay et al

EBioMedicine. Vol. 40, p. 471-487

Journal article

2019

Discovery of therapeutic agents for prostate cancer using genome-scale metabolic modeling and drug repositioning

Beste Turanli, C. Zhang, Woonghee Kim et al

EBioMedicine. Vol. 42, p. 386-396

Journal article

2019

LIPG-promoted lipid storage mediates adaptation to oxidative stress in breast cancer

Cristina Cadenas, Sonja Vosbeck, Karolina Edlund et al

International Journal of Cancer. Vol. 145 (4), p. 901-915

Journal article

2019

Pyruvate kinase L/R is a regulator of lipid metabolism and mitochondrial function

Zhengtao Liu, C. Zhang, Sunjae Lee et al

Metabolic Engineering. Vol. 52, p. 263-272

Journal article

2018

Metabolic network-based stratification of hepatocellular carcinoma reveals three distinct tumor subtypes

G. Bidkhori, Rui Benfeitas, M. Klevstig et al

Proceedings of the National Academy of Sciences of the United States of America. Vol. 115 (50), p. E11874-E11883

Journal article

2018

ESS: A Tool for Genome-Scale Quantification of Essentiality Score for Reaction/Genes in Constraint-Based Modeling

C. Zhang, G. Bidkhori, Rui Benfeitas et al

Frontiers in Physiology. Vol. 9

Journal article

2018

An Integrated Understanding of the Rapid Metabolic Benefits of a Carbohydrate-Restricted Diet on Hepatic Steatosis in Humans

Adil Mardinoglu, Hao Wu, Elias Björnson et al

Cell Metabolism. Vol. 27 (3), p. 559-571.e5

Journal article

2018

Understanding the representative gut microbiota dysbiosis in metformin-treated Type 2 diabetes patients using genome-scale metabolic modeling

Dorines Rosario, Rui Benfeitas, G. Bidkhori et al

Frontiers in Physiology. Vol. 9 (JUN)

Journal article

2018

TCSBN: A database of tissue and cancer specific biological networks

Sunjae Lee, C. Zhang, M. Arif et al

Nucleic Acids Research. Vol. 46 (D1), p. D595-D600

Journal article

2017

Personal model-assisted identification of NAD(+) and glutathione metabolism as intervention target in NAFLD

Adil Mardinoglu, Elias Björnson, C. Zhang et al

Molecular Systems Biology. Vol. 13 (3)

Journal article

2017

Network analyses identify liver-specific targets for treating liver diseases

SangWook Lee, C. Zhang, Z. T. Liu et al

Molecular Systems Biology. Vol. 13 (8)

Journal article

2017

The influence of incommensurability on the long-range periodicity of the Pd(100)-(root 5 x root 5)R27 degrees-PdO(101)

M. Shipilin, A. Stierle, L. R. Merte et al

Surface Science. Vol. 660, p. 1-8

Journal article

2017

A pathology atlas of the human cancer transcriptome

M. Uhlen, C. Zhang, SangWook Lee et al

Science. Vol. 357 (6352), p. 660-+

Journal article

2017

Improving the phenotype predictions of a yeast genome-scale metabolic model by incorporating enzymatic constraints

Benjamin José Sanchez Barja, C. Zhang, Avlant Nilsson et al

Molecular Systems Biology. Vol. 13 (8), p. Article no 935 -

Journal article

2016

Investigating the Combinatory Effects of Biological Networks on Gene Co-expression

C. Zhang, SangWook Lee, Adil Mardinoglu et al

Frontiers in Physiology. Vol. 7 (MAY)

Journal article

2016

Integrated Network Analysis Reveals an Association between Plasma Mannose Levels and Insulin Resistance

SangWook Lee, C. Zhang, M. Kilicarslan et al

Cell Metabolism. Vol. 24 (1), p. 172-184

Journal article

2016

Dysregulated signaling hubs of liver lipid metabolism reveal hepatocellular carcinoma pathogenesis

SangWook Lee, Adil Mardinoglu, C. Zhang et al

Nucleic Acids Research. Vol. 44 (12), p. 5529-5539

Journal article

2015

The gut microbiota modulates host amino acid and glutathione metabolism in mice

Adil Mardinoglu, Saeed Shoaie, Mattias Bergentall et al

Molecular Systems Biology. Vol. 11 (10), p. Article Number: 834-

Journal article

Show project

2015

Logical transformation of genome-scale metabolic models for gene level applications and analysis

C. Zhang, Boyang Ji, Adil Mardinoglu et al

Bioinformatics. Vol. 31 (14), p. 2324-2331

Journal article

Show project

2015

Minimum Information about a Biosynthetic Gene cluster

M. H. Medema, R. Kottmann, P. Yilmaz et al

Nature Chemical Biology. Vol. 11 (9), p. 625-631

Review article

2010

Effective dynamic properties of 3D composite materials containing rigid penny-shaped inclusions

V. V. Mykhas'kiv, O. M. Khay, C. Zhang et al

Waves in Random and Complex Media. Vol. 20 (3), p. 491-510

Journal article

2010

In situ characterization of ceria oxidation states in high-temperature electrochemical cells with ambient pressure XPS

Stephen DeCaluwe, Henrick Bluhm, C. Zhang et al

Journal of Physical Chemistry C. Vol. 114, p. 19853-19861

Journal article

2010

Measuring fundamental properties in operating solid oxide electrochemical cells by using in situ X-ray photoelectron spectroscopy

C. Zhang, M. E. Grass, A. H. McDaniel et al

Nature Materials. Vol. 9 (11), p. 944-949

Journal article

2006

Resistive wall stabilized operation in rotating high beta NSTX plasmas

S. A. Sabbagh, A. C. Sontag, J. Bialek et al

Nuclear Fusion. Vol. 46 (5), p. 635-644

Journal article

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