Johan Bengtsson Palme

Assistant Professor at Systems and Synthetic Biology

Source: chalmers.se

Contact Details ORCID

Publications (39)
Projects (7)

Showing 39 publications

2024

Aberrant microbiomes are associated with increased antibiotic resistance gene load in hybrid mice

Victor Hugo Jarquin-Diaz, Susana Carolina Martins Ferreira, Alice Balard et al

ISME COMMUNICATIONS. Vol. 4 (1)

Journal article

Show project

2024

Low coverage of species constrains the use of DNA barcoding to assess mosquito biodiversity

Maurício Moraes Zenker, Tatiana Pineda Portella, Felipe Arley Costa Pessoa et al

Scientific Reports. Vol. 14 (1)

Journal article

2024

Metagenomic assemblies tend to break around antibiotic resistance genes

Anna Abramova, Antti Karkman, Johan Bengtsson Palme

BMC Genomics. Vol. 25 (1)

Journal article

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2024

Escherichia coli in urban marine sediments: interpreting virulence, biofilm formation, halotolerance, and antibiotic resistance to infer contamination or naturalization

Isabel K. Erb, Carolina Suarez, Ellinor M. Frank et al

FEMS Microbes. Vol. 5

Journal article

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2024

Ceftazidime-avibactam tolerance and persistence among difficult-to-treat KPC-producing Klebsiella pneumoniae clinical isolates from bloodstream infections

N. Abichabki, G. G. Gaspar, L. R. Bortolato et al

European Journal of Clinical Microbiology and Infectious Diseases. Vol. In Press

Journal article

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2023

Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes

Juan Salvador Inda Diaz, David Lund, Marcos Parras Moltó et al

Microbiome. Vol. 11 (1), p. 44-

Journal article

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2023

Development of early life gut resistome and mobilome across gestational ages and microbiota-modifying treatments

Ahmed Bargheet, Claus Klingenberg, Eirin Esaiassen et al

EBioMedicine. Vol. 92

Journal article

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2023

A global baseline for qPCR-determined antimicrobial resistance gene prevalence across environments

Anna Abramova, Thomas U. Berendonk, Johan Bengtsson-Palme

Environment International. Vol. 178

Journal article

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2023

Towards monitoring of antimicrobial resistance in the environment: For what reasons, how to implement it, and what are the data needs?

Johan Bengtsson-Palme, Anna Abramova, Thomas U. Berendonk et al

Environment International. Vol. 178

Review article

Show project

2022

The global groundwater resistome: core ARGs and their dynamics – an in silico re-analysis of publicly available groundwater metagenomes

Ioannis D Kampouris, Thomas U. Berendonk, Johan Bengtsson-Palme et al

Preprint

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2022

Microbial and human transcriptome in vaginal fluid at midgestation: Association with spontaneous preterm delivery

Tove Wikstrom, Sanna Abrahamsson, Johan Bengtsson-Palme et al

Clinical and Translational Medicine. Vol. 12 (9)

Journal article

2019

Industrial wastewater treatment plant enriches antibiotic resistance genes and alters the structure of microbial communities

Johan Bengtsson Palme, Milena Milakovic, Helena Švecová et al

Water Research. Vol. 162, p. 437-445

Journal article

2019

Mumame: A software tool for quantifying gene-specific point-mutations in shotgun metagenomic data

Shruthi Magesh, Viktor Jonsson, Johan Bengtsson Palme

Metabarcoding and Metagenomics. Vol. 3

Journal article

2019

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Peter Brown, Yaoqi Zhou, Aik-Choon Tan et al

Database : the journal of biological databases and curation. Vol. 2019, p. 1-67

Journal article

2019

Introducing ribosomal tandem repeat barcoding for fungi

Christian Wurzbacher, Ellen Larsson, Johan Bengtsson Palme et al

Molecular Ecology Resources. Vol. 19 (1), p. 118-127

Journal article

2018

Environmental factors influencing the development and spread of antibiotic resistance

Johan Bengtsson Palme, Erik Kristiansson, D. G. Joakim Larsson

FEMS Microbiology Reviews. Vol. 42 (1), p. 68-80

Review article

2018

Selective concentration for ciprofloxacin resistance in Escherichia coli grown in complex aquatic bacterial biofilms

Nadine Kraupner, Stefan Ebmeyer, Johan Bengtsson Palme et al

Environment International. Vol. 116, p. 255-268

Journal article

2018

Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker

Johan Bengtsson Palme, Rodney T. Richardson, Marco Meola et al

Bioinformatics. Vol. 34 (23), p. 4027-4033

Journal article

2017

Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data sets

Fredrik Boulund, Fanny Berglund, Carl-Fredrik Flach et al

BMC Genomics. Vol. 18 (1), p. Art 682-

Journal article

2017

Using metagenomics to investigate human and environmental resistomes

Johan Bengtsson Palme, D. G. Joakim Larsson, Erik Kristiansson

Journal of Antimicrobial Chemotherapy. Vol. 72 (10), p. 2690-2703

Journal article

2017

Identification of 76 novel B1 metallo-beta-lactamases through large-scale screening of genomic and metagenomic data

Fanny Berglund, Nachiket Marathe, Tobias Österlund et al

Microbiome. Vol. 5 (1), p. 134-134

Journal article

2017

Does antifouling paint select for antibiotic resistance?

Carl-Fredrik Flach, C. Pal, Carl Johan Svensson et al

Science of the Total Environment. Vol. 590-591, p. 461-468

Journal article

2017

In vivo analysis of the viable microbiota and Helicobacter pylori transcriptome in gastric infection and early stages of carcinogenesis

Kaisa Thorell, Johan Bengtsson Palme, Oscar Hsin Fu Liu et al

Infection and Immunity. Vol. 85 (10)

Journal article

2016

Elucidating selection processes for antibiotic resistance in sewage treatment plants using metagenomics

Johan Bengtsson Palme, Rickard Hammarén, C. Pal et al

Science of the Total Environment. Vol. 572, p. 697-712

Journal article

2016

Strategies to improve usability and preserve accuracy in biological sequence databases

Johan Bengtsson Palme, Fredrik Boulund, Robert Edström et al

Proteomics. Vol. 16 (18), p. 2454-2460

Journal article

2016

Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)

Kessy Abarenkov, Rachel I. Adams, Irinyi Laszlo et al

MycoKeys. Vol. 16, p. 1-15

Journal article

2016

Minimal selective concentrations of tetracycline in complex aquatic bacterial biofilms

Sara Lundström, M. Ostman, Johan Bengtsson Palme et al

Science of the Total Environment. Vol. 553, p. 587-95

Journal article

2016

The structure and diversity of human, animal and environmental resistomes

C. Pal, Johan Bengtsson Palme, Erik Kristiansson et al

Microbiome. Vol. 4, p. artikel nr 54-

Journal article

2016

Metaxa2 Diversity Tools: Easing microbial community analysis with Metaxa2

Johan Bengtsson Palme, Kaisa Thorell, Christian Wurzbacher et al

Ecological Informatics. Vol. 33, p. 45-50

Journal article

2015

The human gut microbiome as a transporter of antibiotic resistance genes between continents

Johan Bengtsson Palme, Martin Angelin, M. Huss et al

Antimicrobial Agents and Chemotherapy. Vol. 59 (10), p. 6551-6560

Journal article

2015

A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts

R. Henrik Nilsson, Leho Tedersoo, Martin Ryberg et al

Microbes and Environments. Vol. 30 (2), p. 145-150

Journal article

2015

Metagenomic Sequencing of Marine Periphyton: Taxonomic and Functional Insights into Biofilm Communities

Kemal Sanli, Johan Bengtsson Palme, R. Henrik Nilsson et al

Frontiers in Microbiology. Vol. 6 (1192)

Journal article

2015

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential

C. Pal, Johan Bengtsson Palme, Erik Kristiansson et al

BMC Genomics. Vol. 16 (1), p. 964-

Journal article

2015

Metaxa2: Improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data

Johan Bengtsson Palme, Martin Hartmann, Martin Eriksson et al

Molecular Ecology Resources. Vol. 15 (6), p. 1403-1414

Journal article

2014

Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India

Johan Bengtsson Palme, Fredrik Boulund, Jerker Fick et al

Frontiers in Microbiology. Vol. 5 (648)

Journal article

2014

BacMet: antibacterial biocide and metal resistance genes database

C. Pal, Johan Bengtsson Palme, Christopher Rensing et al

Nucleic Acids Research. Vol. 42 (D1), p. D737-D743

Journal article

2014

Improving ITS sequence data for identification of plant pathogenic fungi

R. Henrik Nilsson, Kevin D. Hyde, Julia Pawłowska et al

Fungal Diversity. Vol. 67 (1), p. 11-19

Journal article

2013

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

Johan Bengtsson Palme, Martin Ryberg, Martin Hartmann et al

Methods in Ecology and Evolution. Vol. 4 (10), p. 914-919

Journal article

2013

Metaxa, overview

Johan Bengtsson Palme, Martin Hartmann, Martin Eriksson et al

Encyclopedia of Metagenomics

Book chapter

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Showing 7 research projects

2024–2027

RECEIVER: Risks associated with Evolution in bacterial Communities Exposed to antibiotics: Interactions patterns, Virulence enrichment, Ecological consequences and Resistance development

Johan Bengtsson Palme Systems and Synthetic Biology

Swedish Research Council (VR)

2024–2029

Predicting the future spread of antibiotic resistance genes, has been granted funding

Erik Kristiansson Applied Mathematics and Statistics

Johan Bengtsson Palme Systems and Synthetic Biology

Science for Life Laboratory (SciLifeLab)

Knut and Alice Wallenberg Foundation

2023–2026

Surveillance for Emerging Antimicrobial Resistance through Characterization of the uncharted Environmental Resistome

Johan Bengtsson Palme Systems and Synthetic Biology

Swedish Research Council (VR)

1 publication exists

2023–2025

SIDA sub-program 13, Diarrheal diseases

Johan Bengtsson-Palme Systems and Synthetic Biology

2022–2027

Predicting future pathogenicity and antibiotic resistance

Johan Bengtsson-Palme Systems and Synthetic Biology

Swedish Foundation for Strategic Research (SSF)

5 publications exist

2022–2024

Low-level Exposure to Antibiotics Disturbs Interactions among Non-pathogenic bacteria in the Gastrointestinal tract

Johan Bengtsson-Palme Applied Mathematics and Statistics

Swedish Research Council (VR)

2022–2023

EMBARK: Establishing a Monitoring Baseline for Antibiotic Resistance in Key environments

Johan Bengtsson-Palme System Biology

Swedish Research Council (VR)

7 publications exist

There might be more projects where Johan Bengtsson Palme participates, but you have to be logged in as a Chalmers employee to see them.