Mats Rudemo

Gästprofessor at Chalmers, Mathematical Sciences, Applied Mathematics and Statistics

My research is phocused on statistical methods in image analysis with applications to material and life sciences.Personal home page: www.math.chalmers.se/~rudemo/

Source: chalmers.se

Projects

2014–2019

Material structures seen through microscopes and statistics

Aila Särkkä Applied Mathematics and Statistics
Charlotte Hamngren Blomqvist Eva Olsson Group
Mats Rudemo Applied Mathematics and Statistics
Cecilia Fager Eva Olsson Group
Sandra Eriksson Barman Applied Mathematics and Statistics
Eva Olsson Eva Olsson Group
Holger Rootzen Applied Mathematics and Statistics
David Bolin Applied Mathematics and Statistics
Marco Longfils Applied Mathematics and Statistics
Niklas Lorén Eva Olsson Group
Swedish Foundation for Strategic Research (SSF)

There might be more projects where Mats Rudemo participates, but you have to be logged in as a Chalmers employee to see them.

Publications

2016

Single particle raster image analysis of diffusion

Marco Longfils, Erich Schuster, Niklas Lorén et al
Journal of Microscopy. Vol. 266 (1), p. 3-14
Scientific journal article - peer reviewed
2016

From static micrographs to particle aggregation dynamics in three dimensions

Henrike Häbel, Aila Särkkä, Mats Rudemo et al
Journal of Microscopy. Vol. 262 (1), p. 102-111
Scientific journal article - peer reviewed
2015

Fluorescence recovery after photobleaching in material and life sciences: Putting theory into practice

Niklas Lorén, Joel Hagman, Jenny Jonasson et al
Quarterly Reviews of Biophysics. Vol. 48 (3), p. 323-387
Scientific journal article - peer reviewed
2015

Valid and efficient manual estimates of intracranial volume from magnetic resonance images

Niklas Klasson, Erik Olsson, Mats Rudemo et al
BMC Medical Imaging. Vol. 15, p. Art. no. 5
Scientific journal article - peer reviewed
2014

Disposable microfluidic chip with integrated light sheet illumination enables diagnostics based on membrane vesicles

H. Deschout, K. Raemdonck, S. Stremersch et al
17th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2013; Freiburg; Germany; 27 October 2013 through 31 October 2013. Vol. 3, p. 2010-2012
Conference paper - peer reviewed
2014

Identifying directional persistence in intracellular particle motion using Hidden Markov Models

Magnus Röding, M. Guo, D. A. Weitz et al
Mathematical Biosciences. Vol. 248, p. 140-145
Scientific journal article - peer reviewed
2014

Estimation of mass thickness response of embedded aggregated silica nanospheres from high angle annular dark-field scanning transmission electron micrographs

Matias Nordin, Christoffer Abrahamsson, Charlotte Hamngren Blomqvist et al
Journal of Microscopy. Vol. 253 (2), p. 166-170
Scientific journal article - peer reviewed
2014

On-chip light sheet illumination enables diagnostic size and concentration measurements of membrane vesicles in biofluids

H. Deschout, K. Raemdonck, S. Stremersch et al
Nanoscale. Vol. 6 (3), p. 1741-1747
Scientific journal article - peer reviewed
2014

Interactions and Diffusion in Fine-Stranded beta-lactoglobulin Gels Determined via FRAP and Binding

Erich Schuster, Anne-Marie Hermansson, Camilla Öhgren et al
Biophysical Journal. Vol. 106 (1), p. 253-262
Scientific journal article - peer reviewed
2013

Automatic Particle Detection in Microscopy Using Temporal Correlations

Magnus Röding, Hendrik Deschout, Thomas Martens et al
Microscopy Research and Technique. Vol. 76 (10), p. 997-1006
Scientific journal article - peer reviewed
2013

Self-calibrated concentration measurements of polydisperse nanoparticles

Magnus Röding, H. Deschout, K. Braeckmans et al
Journal of Microscopy. Vol. 252 (1), p. 79-88
Scientific journal article - peer reviewed
2013

Measuring absolute nanoparticle number concentrations from particle count time series

Magnus Röding, H. Deschout, K. Braeckmans et al
Journal of Microscopy. Vol. 251 (1), p. 19-26
Scientific journal article - peer reviewed
2013

MS risk genes are transcriptionally regulated in CSF leukocytes at relapse

Margareta Jernås, Clas Malmeström, Markus Axelsson et al
Multiple sclerosis (Houndmills, Basingstoke, England). Vol. 19 (4), p. 403-410
Scientific journal article - peer reviewed
2012

The gamma distribution model for pulsed-field gradient NMR studies of molecular-weight distributions of polymers

Magnus Röding, Diana Bernin, Jenny Jonasson et al
Journal of Magnetic Resonance. Vol. 222, p. 105-111
Scientific journal article - peer reviewed
2011

Hemocompatibility of siRNA loaded dextran nanogels

B Naeye, H Deschout, Magnus Röding et al
Biomaterials. Vol. 32 (34), p. 9120-9127
Scientific journal article - peer reviewed
2011

Measuring absolute number concentrations of nanoparticles using single-particle tracking

Magnus Röding, H. Deschout, K. Braeckmans et al
Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. Vol. 84 (3)
Scientific journal article - peer reviewed
2011

Microstructure of polymer hydrogels studied by pulsed field gradient NMR diffusion and TEM methods

Diana Bernin, G. J. Goudappel, M. van Ruijven et al
Soft Matter. Vol. 7 (12), p. 5711-5716
Scientific journal article - peer reviewed
2011

Identification of Adipocyte Genes Regulated by Caloric Intake.

Niclas Franck, Anders Gummesson, Margareta Jernås et al
The Journal of clinical endocrinology and metabolism. Vol. 96 (2), p. E413-E418
Scientific journal article - peer reviewed
2010

Straightforward FRAP for quantitative diffusion measurements with a laser scanning microscope

Hendrik Deschout, Joel Hagman, Sophia Fransson et al
Optics Express. Vol. 18 (22), p. 22886-22905
Scientific journal article - peer reviewed
2010

Pixel-based analysis of FRAP data with a general initial bleaching profile

Jenny Jonasson, Joel Hagman, Niklas Lorén et al
Journal of Microscopy. Vol. 239 (2), p. 142-153
Scientific journal article - peer reviewed
2009

Spatial prediction of weed intensities from exact count data and image-based estimates

Gilles Guillot, N. Loren, Mats Rudemo et al
Journal of the Royal Statistical Society Series C-Applied Statistics. Vol. 58, p. 525-542
Scientific journal article - peer reviewed
2009

Changes in adipose tissue gene expression and plasma levels of adipokines and acute-phase proteins in patients with critical illness.

Margareta Jernås, Bob Olsson, Kajsa Sjöholm et al
Metabolism: clinical and experimental. Vol. 58 (1), p. 102-8
Scientific journal article - peer reviewed
2008

Empirical Bayes models for multiple probe type microarrays at the probe level

Magnus Åstrand, Petter Mostad, Mats Rudemo et al
BMC Bioinformatics. Vol. 9
Scientific journal article - peer reviewed
2008

A pixel-based likelihood framework for analysis of fluorescence recovery after photobleaching data

Jenny Jonasson, Magnus Nydén, Mats Rudemo et al
Journal of Microscopy. Vol. 232 (2), p. 260-269
Scientific journal article - peer reviewed
2007

Weighted Analysis of General Microarray Experiments

Anders Sjögren, Erik Kristiansson, Mats Rudemo et al
Preprint
2007

Improved Covariance Matrix Estimators for Weighted Analysis of Microarray Data

Magnus Åstrand, Petter Mostad, Mats Rudemo et al
Preprint
2007

Connectivity can be used to identify key genes in DNA microarray data: a study based on gene expression in nasal polyps before and after treatment with glucocorticoids

Mikael Benson, DA Hov, T Clancy et al
Acta Otolaryngolica. Vol. 127 (10), p. 1074-1079
Scientific journal article - peer reviewed
2007

Identification of the three-dimensional gel microstructure from transmission electron micrographs

Rasmus Nisslert, Mats Kvarnström, Niklas Lorén et al
Journal of Microscopy. Vol. 225 (1), p. 10-21
Scientific journal article - peer reviewed
2007

Discrimination and scoring using small sets of genes for two-sample microarray data

Gilles Guillot, Maja Olsson, Mikael Benson et al
Mathematical Biosciences. Vol. 205 (2), p. 195-203
Scientific journal article - peer reviewed
2007

Empirical Bayes Models for Multiple Probe Type Arrays at the Probe Level

Magnus Åstrand, Petter Mostad, Mats Rudemo et al
Preprint
2007

Weighted Analysis of General Microarray Experiments

Anders Sjögren, Erik Kristiansson, Mats Rudemo et al
BMC Bioinformatics. Vol. 8, p. 15
Scientific journal article - peer reviewed
2007

Improved Covariance Matrix Estimators for Weighted Analysis of Microarray Data

Magnus Åstrand, Petter Mostad, Mats Rudemo et al
Journal of Computational Biology. Vol. 14 (10), p. 1353-1367
Scientific journal article - peer reviewed
2006

Quality Optimised Analysis of General Paired Microarray Experiments

Erik Kristiansson, Anders Sjögren, Mats Rudemo et al
Preprint
2006

A network-based analysis of allergen-challenged CD4+T cells from patients with allergic rhinitis

Mikael Benson, Lena M S Carlsson, G. Guillot et al
GENES AND IMMUNITY. Vol. 7 (6), p. 514-521
Scientific journal article - peer reviewed
2006

Separation of human adipocytes by size: hypertrophic fat cells display distinct gene expression

Margareta Jernås, Jenny Palming, Kajsa Sjöholm et al
The FASEB Journal. Vol. 20, p. E832–E839
Scientific journal article - peer reviewed
2006

Increased expression of aquaporin 3 in atopic eczema.

Maja Olsson, Ann Broberg, Margareta Jernås et al
Allergy. Vol. 61 (9), p. 1132-7
Scientific journal article - peer reviewed
2006

Quality Optimised Analysis of General Paired Microarray Experiments

Erik Kristiansson, Anders Sjögren, Mats Rudemo et al
Statistical Applications in Genetics and Molecular Biology. Vol. 5 (1), p. i-29
Scientific journal article - peer reviewed
2005

Evaluation of reference genes for studies of gene expression in human adipose tissue.

Britt G. Gabrielsson, Louise Olofsson, Anders Sjögren et al
Obesity research. Vol. 13 (4), p. 649-52
Scientific journal article - peer reviewed
2005

Weighted Analysis of Paired Microarray Experiments

Erik Kristiansson, Anders Sjögren, Mats Rudemo et al
Statistical Applications in Genetics and Molecular Biology. Vol. 4 (1)
Scientific journal article - peer reviewed
2005

Weighted Analysis of Paired Microarray Experiments

Erik Kristiansson, Anders Sjögren, Mats Rudemo et al
Preprint
2004

Pros and cons of microarray technology in allergy research

Mikael Benson, M. Olsson, Mats Rudemo et al
Clinical and Experimental Allergy. Vol. 34 (7), p. 1001-1006
Scientific journal article - peer reviewed
2004

Statistical exploration of variation in quantitative two-dimensional gel electrophoresis

John Gustafsson, Robert Caesar, C. A. Glasbey et al
Proteomics. Vol. 4 (12), p. 3791-3799
Scientific journal article - peer reviewed
2004

DNA microarray analysis of chromosomal susceptibility regions to identify candidate genes for allergic disease: a pilot study.

Mikael Benson, Per-Arne Svensson, Mikael Adner et al
Acta Oto-Laryngologica. Vol. 124 (7), p. 813-9
Scientific journal article - peer reviewed
2004

Gene profiling reveals increased expression of uteroglobin and other anti-inflammatory genes in glucocorticoid-treated nasal polyps.

Mikael Benson, Lena M S Carlsson, Mikael Adner et al
Journal of Allergy and Clinical Immunology. Vol. 113 (6), p. 1137-43
Scientific journal article - peer reviewed
2003

Statistical exploration of variation in quantitative two-dimensional gel electrophoresis data

John Gustafsson, Robert Svensson, Chris A. Glasbey et al
Preprint
2002

Random patterns of non-overlapping convex grains

Marianne Månsson, Mats Rudemo,
Advances in Applied Probability. Vol. 34, p. 718-738
Scientific journal article - peer reviewed
2002

Variance models for microarray data

Mats Rudemo, Tatsiana Lobovkina, Petter Mostad et al
Preprint
2002

Warping two-dimensional electrophoresis gel images to correct for geometric distortions of the spot pattern

John Gustafsson, Anders Blomberg, Mats Rudemo et al
Electrophoresis. Vol. 23 (11), p. 1731-1744
Scientific journal article - peer reviewed
2001

Random patterns of non-overlapping convex grains

Marianne Månsson, Mats Rudemo,
Preprint
1999

Bayesian analysis of spatial point patterns from noisy observations

Jens Lund, Antti Penttinen, Mats Rudemo et al
Preprint
1999

Models for point processes observed with noise

Jens Lund, Mats Rudemo,
Preprint
1973

Partially observed Markov chains and point processes

Mats Rudemo,
Doctoral thesis