Mats Rudemo

Gästprofessor at Chalmers, Mathematical Sciences, Applied Mathematics and Statistics

My research is phocused on statistical methods in image analysis with applications to material and life sciences.Personal home page: www.math.chalmers.se/~rudemo/

Source: chalmers.se

Projects

2014–2019

Material structures seen through microscopes and statistics

Aila Särkkä Applied Mathematics and Statistics
Charlotte Hamngren Blomqvist Eva Olsson Group
Mats Rudemo Applied Mathematics and Statistics
Cecilia Fager Eva Olsson Group
Sandra Eriksson Barman Applied Mathematics and Statistics
Eva Olsson Eva Olsson Group
Holger Rootzen Applied Mathematics and Statistics
David Bolin Applied Mathematics and Statistics
Marco Longfils Applied Mathematics and Statistics
Niklas Lorén Eva Olsson Group
Swedish Foundation for Strategic Research (SSF)

There might be more projects where Mats Rudemo participates, but you have to be logged in as a Chalmers employee to see them.

Publications

2016

From static micrographs to particle aggregation dynamics in three dimensions

Matias Nordin, Eva Olsson, Charlotte Hamngren Blomqvist et al
Journal of Microscopy. Vol. 262 (1), p. 102-111
Journal article
2016

Single particle raster image analysis of diffusion

Niklas Lorén, Marco Longfils, Erich Schuster et al
Journal of Microscopy. Vol. 266 (1), p. 3-14
Journal article
2015

Valid and efficient manual estimates of intracranial volume from magnetic resonance images

Mats Rudemo, Niklas Klasson, Carl Eckerström et al
BMC Medical Imaging. Vol. 15 (1), p. Art. no. 5-
Journal article
2015

Fluorescence recovery after photobleaching in material and life sciences: Putting theory into practice

J.G. McNally, N. Smisdom, Niklas Lorén et al
Quarterly Reviews of Biophysics. Vol. 48 (3), p. 323-387
Journal article
2014

Estimation of mass thickness response of embedded aggregated silica nanospheres from high angle annular dark-field scanning transmission electron micrographs

Mats Rudemo, Charlotte Hamngren Blomqvist, Christoffer Abrahamsson et al
Journal of Microscopy. Vol. 253 (2), p. 166-170
Journal article
2014

Identifying directional persistence in intracellular particle motion using Hidden Markov Models

Aila Särkkä, M. Guo, Magnus Röding et al
Mathematical Biosciences. Vol. 248 (1), p. 140-145
Journal article
2014

Estimation of mass thickness response of embedded aggregated silica nanospheres from high angle annular dark-field scanning transmission electron micrographs

Henrike Häbel, Christoffer Abrahamsson, Matias Nordin et al
Journal of Microscopy. Vol. 253 (2), p. 166-170
Journal article
2014

On-chip light sheet illumination enables diagnostic size and concentration measurements of membrane vesicles in biofluids

S. Jiguet, Kevin Braeckmans, P. Maoddi et al
Nanoscale. Vol. 6 (3), p. 1741-1747
Journal article
2014

Interactions and Diffusion in Fine-Stranded beta-lactoglobulin Gels Determined via FRAP and Binding

Camilla Öhgren, Erich Schuster, Mats Rudemo et al
Biophysical Journal. Vol. 106 (1), p. 253-262
Journal article
2014

Estimation of mass thickness response of embedded aggregated silica nanospheres from high angle annular dark-field scanning transmission electron micrographs

Magnus Röding, Matias Nordin, Mats Rudemo et al
Journal of Microscopy. Vol. 253 (2), p. 166-170
Journal article
2014

Disposable microfluidic chip with integrated light sheet illumination enables diagnostics based on membrane vesicles

Kevin Braeckmans, J. Demeester, M. Bracke et al
17th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2013; Freiburg; Germany; 27 October 2013 through 31 October 2013. Vol. 3, p. 2010-2012
Paper in proceedings
2013

Measuring absolute nanoparticle number concentrations from particle count time series

Kevin Braeckmans, Magnus Röding, Hendrik Deschout et al
Journal of Microscopy. Vol. 251 (1), p. 19-26
Journal article
2013

Self-calibrated concentration measurements of polydisperse nanoparticles

Magnus Röding, Aila Särkkä, Kevin Braeckmans et al
Journal of Microscopy. Vol. 252 (1), p. 79-88
Journal article
2013

Automatic Particle Detection in Microscopy Using Temporal Correlations

Aila Särkkä, Hendrik Deschout, Magnus Röding et al
Microscopy Research and Technique. Vol. 76 (10), p. 997-1006
Journal article
2013

MS risk genes are transcriptionally regulated in CSF leukocytes at relapse

Clas Malmeström, Jan Lycke, Bob Olsson et al
Multiple Sclerosis. Vol. 19 (4), p. 403-410
Journal article
2012

The gamma distribution model for pulsed-field gradient NMR studies of molecular-weight distributions of polymers

Jenny Jonasson, Mats Rudemo, Diana Bernin et al
Journal of Magnetic Resonance. Vol. 222, p. 105-111
Journal article
2011

Microstructure of polymer hydrogels studied by pulsed field gradient NMR diffusion and TEM methods

Mats Rudemo, A. M. Hermansson, Magnus Nydén et al
Soft Matter. Vol. 7 (12), p. 5711-5716
Journal article
2011

Identification of Adipocyte Genes Regulated by Caloric Intake.

Gilles Guillot, Per-Arne Svensson, Mats Rudemo et al
Journal of Clinical Endocrinology and Metabolism. Vol. 96 (2), p. E413-E418
Journal article
2011

Measuring absolute number concentrations of nanoparticles using single-particle tracking

Hendrik Deschout, Kevin Braeckmans, Mats Rudemo et al
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. Vol. 84 (3)
Journal article
2011

Hemocompatibility of siRNA loaded dextran nanogels

SC De Smedt, B Naeye, H Deschout et al
Biomaterials. Vol. 32 (34), p. 9120-9127
Journal article
2010

Straightforward FRAP for quantitative diffusion measurements with a laser scanning microscope

Mats Rudemo, Joel H Hagman, Sophia Fransson et al
Optics Express. Vol. 18 (22), p. 22886-22905
Journal article
2010

Pixel-based analysis of FRAP data with a general initial bleaching profile

Mats Rudemo, Niklas Lorén, Joel H Hagman et al
Journal of Microscopy. Vol. 239 (2), p. 142-153
Journal article
2009

Spatial prediction of weed intensities from exact count data and image-based estimates

N. Lorén, Mats Rudemo, Gilles Guillot
Journal of the Royal Statistical Society. Series C: Applied Statistics. Vol. 58, p. 525-542
Journal article
2009

Changes in adipose tissue gene expression and plasma levels of adipokines and acute-phase proteins in patients with critical illness.

Bob Olsson, Kajsa Sjöholm, Carl David Sjöström et al
Metabolism: clinical and experimental. Vol. 58 (1), p. 102-8
Journal article
2008

Empirical Bayes models for multiple probe type microarrays at the probe level

Mats Rudemo, Petter Mostad, MAGNUS ÅSTRAND
BMC Bioinformatics. Vol. 9
Journal article
2008

A pixel-based likelihood framework for analysis of fluorescence recovery after photobleaching data

Magnus Nydén, Jenny Jonasson, Mats Rudemo
Journal of Microscopy. Vol. 232 (2), p. 260-269
Journal article
2007

Weighted Analysis of General Microarray Experiments

Mats Rudemo, Olle Nerman, Erik Kristiansson et al
BMC Bioinformatics. Vol. 8, p. 15-
Journal article
2007

Discrimination and scoring using small sets of genes for two-sample microarray data

Mats Rudemo, Gilles Guillot, Mikael Benson et al
Mathematical Biosciences. Vol. 205 (2), p. 195-203
Journal article
2007

Identification of the three-dimensional gel microstructure from transmission electron micrographs

Magnus Nydén, Niklas Lorén, Mats Rudemo et al
Journal of Microscopy. Vol. 225 (1), p. 10-21
Journal article
2007

Weighted Analysis of General Microarray Experiments

Olle Nerman, Anders Sjögren, Erik Kristiansson et al
Preprint
2007

Empirical Bayes Models for Multiple Probe Type Arrays at the Probe Level

MAGNUS ÅSTRAND, Mats Rudemo, Petter Mostad
Preprint
2007

Improved Covariance Matrix Estimators for Weighted Analysis of Microarray Data

Petter Mostad, Mats Rudemo, MAGNUS ÅSTRAND
Journal of Computational Biology. Vol. 14 (10), p. 1353-1367
Journal article
2007

Improved Covariance Matrix Estimators for Weighted Analysis of Microarray Data

Petter Mostad, Mats Rudemo, MAGNUS ÅSTRAND
Preprint
2006

Quality Optimised Analysis of General Paired Microarray Experiments

Anders Sjögren, Erik Kristiansson, Olle Nerman et al
Statistical Applications in Genetics and Molecular Biology. Vol. 5 (1), p. i-29
Journal article
2006

Quality Optimised Analysis of General Paired Microarray Experiments

Anders Sjögren, Erik Kristiansson, Mats Rudemo et al
Preprint
2006

Increased expression of aquaporin 3 in atopic eczema.

Lena M S Carlsson, Mark Suurküla, Ann Broberg et al
Allergy: European Journal of Allergy and Clinical Immunology. Vol. 61 (9), p. 1132-7
Journal article
2006

Separation of human adipocytes by size: hypertrophic fat cells display distinct gene expression

Björn Carlsson, Mats Rudemo, Per-Arne Svensson et al
FASEB Journal. Vol. 20 (9), p. E832-E839
Journal article
2006

A network-based analysis of allergen-challenged CD4+T cells from patients with allergic rhinitis

M.A. Langston, Margareta Jernås, Mats Rudemo et al
Genes and Immunity. Vol. 7 (6), p. 514-521
Journal article
2005

Weighted Analysis of Paired Microarray Experiments

Anders Sjögren, Mats Rudemo, Erik Kristiansson et al
Preprint
2005

Evaluation of reference genes for studies of gene expression in human adipose tissue.

Lena M S Carlsson, Britt Gabrielsson, Mats Rudemo et al
Obesity Research. Vol. 13 (4), p. 649-52
Journal article
2005

Weighted Analysis of Paired Microarray Experiments

Mats Rudemo, Anders Sjögren, Erik Kristiansson et al
Statistical Applications in Genetics and Molecular Biology. Vol. 4 (1)
Journal article
2004

Statistical exploration of variation in quantitative two-dimensional gel electrophoresis

Anders Blomberg, John Gustafsson, Robert Caesar et al
Proteomics. Vol. 4 (12), p. 3791-3799
Journal article
2004

DNA microarray analysis of chromosomal susceptibility regions to identify candidate genes for allergic disease: a pilot study.

Björn Carlsson, Tommy Martinsson, Lars Olaf Cardell et al
Acta Oto-Laryngologica. Vol. 124 (7), p. 813-9
Journal article
2004

Pros and cons of microarray technology in allergy research

Göran Wennergren, M. Olsson, Mats Rudemo et al
Clinical and Experimental Allergy. Vol. 34 (7), p. 1001-1006
Journal article
2004

Gene profiling reveals increased expression of uteroglobin and other anti-inflammatory genes in glucocorticoid-treated nasal polyps.

Mats Rudemo, Lars Olaf Cardell, Anders Sjögren et al
Journal of Allergy and Clinical Immunology. Vol. 113 (6), p. 1137-43
Journal article
2003

Statistical exploration of variation in quantitative two-dimensional gel electrophoresis data

Mats Rudemo, Robert Svensson, Chris A. Glasbey et al
Preprint
2002

Variance models for microarray data

Tatsiana Lobovkina, Petter Mostad, Per Lindahl et al
Preprint
2002

Warping two-dimensional electrophoresis gel images to correct for geometric distortions of the spot pattern

Mats Rudemo, Anders Blomberg, John Gustafsson
Electrophoresis. Vol. 23 (11), p. 1731-1744
Journal article
2002

Random patterns of non-overlapping convex grains

Mats Rudemo, Marianne Månsson
Advances in Applied Probability. Vol. 34, p. 718-738
Journal article
2001

Random patterns of non-overlapping convex grains

Marianne Månsson, Mats Rudemo
Preprint
1999

Models for point processes observed with noise

Jens Lund, Mats Rudemo
Preprint
1999

Bayesian analysis of spatial point patterns from noisy observations

Jens Lund, Mats Rudemo, Antti Penttinen
Preprint
1973

Partially observed Markov chains and point processes

Mats Rudemo
Doctoral thesis