Philip Gerlee

Professor at Applied Mathematics and Statistics

My main research interest is mathematical biology, in particular cancer modelling. I am also interested in mathematical aspects of evolution and ecology, such as the evolution of bacterial consortia and applications of game theory to biology.

Source: chalmers.se
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Showing 57 publications

2024

Model uncertainty, the COVID-19 pandemic, and the science-policy interface

Henrik Thorén, Philip Gerlee
Royal Society Open Science. Vol. 11 (2)
Journal article
2024

Turing pattern formation on the sphere is robust to the removal of a hole

Johannes Borgqvist, Philip Gerlee, Carl Lundholm
Journal of Mathematical Biology. Vol. 88 (2)
Journal article
2024

Evaluation and communication of pandemic scenarios

Philip Gerlee, Henrik Thorén, Anna Saxne Jöud et al
The Lancet Digital Health. Vol. 6 (8), p. E543-E544
Other text in scientific journal
2024

Inference on an interacting diffusion system with application to in vitro glioblastoma migration

Gustav Lindwall, Philip Gerlee
Mathematical Medicine and Biology. Vol. 41 (3)
Journal article
2023

Fast and precise inference on diffusivity in interacting particle systems

Gustav Lindwall, Philip Gerlee
Journal of Mathematical Biology. Vol. 86 (5)
Journal article
2023

Bayesian inference on the Allee effect in cancer cell line populations using time-lapse microscopy images

Gustav Lindwall, Philip Gerlee
Journal of Theoretical Biology. Vol. 574
Journal article
2023

Derivation of a Generalised Replicator Equation in the Limit of Weak Selection

Philip Gerlee
Springer Proceedings in Mathematics and Statistics. Vol. 429, p. 249-260
Paper in proceeding
2023

Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems

Sara Hamis, Panu Somervuo, J. Arvid Ågren et al
Journal of Mathematical Biology. Vol. 86 (5)
Journal article
2023

Bayesian inference on the Allee effect in cancer cell populations using time-lapse microscopy images

Gustav Lindwall, Philip Gerlee
Journal of Theoretical Biology. Vol. 574
Journal article
2023

Inference of glioblastoma migration and proliferation rates using single time-point images

Emil Rosén, Hitesh Bhagavanbhai Mangukiya, Ludmila Elfineh et al
Communications Biology. Vol. 6 (1)
Journal article
2022

Nowcasting (Short-Term Forecasting) of COVID-19 Hospitalizations Using Syndromic Healthcare Data, Sweden, 2020

Armin Spreco, Anna Jöud, Olle Eriksson et al
Emerging Infectious Diseases. Vol. 28 (3), p. 564-571
Journal article
2022

Ladderpath Approach: How Tinkering and Reuse Increase Complexity and Information

Yu Liu, Zengru Di, Philip Gerlee
Entropy. Vol. 24 (8)
Journal article
2022

Weak Selection and the Separation of Eco-evo Time Scales using Perturbation Analysis

Philip Gerlee
Bulletin of Mathematical Biology. Vol. 84 (5)
Journal article
2022

Autocrine signaling can explain the emergence of Allee effects in cancer cell populations

Philip Gerlee, P. M. Altrock, Adam A. Malik et al
PLoS Computational Biology. Vol. 18 (3)
Journal article
2021

Predicting regional COVID-19 hospital admissions in Sweden using mobility data

Philip Gerlee, Julia Karlsson, Ingrid Fritzell et al
Scientific Reports. Vol. 11 (1)
Journal article
2021

Estimating the SARS-CoV-2 infected population fraction and the infection-to-fatality ratio: a data-driven case study based on Swedish time series data

Andreas Wacker, Anna Jöud, Bo Bernhardsson et al
Scientific Reports. Vol. 11 (1)
Journal article
2021

Combining engineering and teacher education – ideas and experiences from Chalmers University of Technology

Samuel Bengmark, Torbjörn Lundh, Philip Gerlee
Bidrag från 8:e Utvecklingskonferensen för Sveriges ingenjörsutbildningar
Paper in proceeding
2021

Cell polarisation in a bulk-surface model can be driven by both classic and non-classic Turing instability

Johannes Borgqvist, Adam Malik, Carl Lundholm et al
npj Systems Biology and Applications. Vol. 7 (1)
Journal article
2020

The Impact of Elastic Deformations of the Extracellular Matrix on Cell Migration

Adam Malik, Bernt Wennberg, Philip Gerlee
Bulletin of Mathematical Biology. Vol. 82 (4)
Journal article
2019

Mathematical modelling of cell migration: stiffness dependent jump rates result in durotaxis

Adam Malik, Philip Gerlee
Journal of Mathematical Biology. Vol. 78 (7), p. 2289-2315
Journal article
2019

Persistence of cooperation in diffusive public goods games

Philip Gerlee, Philipp M. Altrock
Physical Review E. Vol. 99 (6)
Journal article
2019

Neighborhood size-effects shape growing population dynamics in evolutionary public goods games

Gregory J. Kimmel, Philip Gerlee, Joel S. Brown et al
Communications Biology. Vol. 2 (1)
Journal article
2019

Time scales and wave formation in non-linear spatial public goods games

Gregory J. Kimmel, Philip Gerlee, P. M. Altrock
PLoS Computational Biology. Vol. 15 (9)
Journal article
2019

Inferring rates of metastatic dissemination using stochastic network models

Philip Gerlee, Mia Johansson
PLoS Computational Biology. Vol. 15 (4), p. 1-20
Journal article
2017

The Influence of Cellular Characteristics on the Evolution of Shape Homeostasis

Philip Gerlee, D. Basanta, A. R. A. Anderson
Artificial Life. Vol. 23 (3), p. 424-448
Journal article
2017

Impact of anticipation in dynamical systems

Philip Gerlee, Kolbjörn Tunström, Torbjörn Lundh et al
Physical Review E. Vol. 96 (6)
Journal article
2017

Extinction rates in tumour public goods games

Philip Gerlee, P. M. Altrock
Journal of the Royal Society Interface. Vol. 14 (134)
Journal article
2016

Estimating the probability of coexistence in cross-feeding communities

Björn Vessman, Philip Gerlee, Torbjörn Lundh
Journal of Theoretical Biology. Vol. 408 (7), p. 13-21
Journal article
2016

Scientific Models

Philip Gerlee, Torbjörn Lundh
Book
2016

Travelling wave analysis of a mathematical model of glioblastoma growth

Philip Gerlee, Sven Nelander
Mathematical Biosciences. Vol. 276, p. 75-81
Journal article
2015

Complexity and stability in growing cancer cell populations

Philip Gerlee, P. M. Altrock
Proceedings of the National Academy of Sciences of the United States of America. Vol. 112 (21), p. E2742-E2743
Other text in scientific journal
2015

Bridging scales in cancer progression: Mapping genotype to phenotype using neural networks

Philip Gerlee, Eunjung Kim, Alexander Anderson
Seminars in Cancer Biology. Vol. 30, p. 30-41
Journal article
2015

The evolution of carrying capacity in constrained and expanding tumour cell populations

Philip Gerlee, A. R. A. Anderson
Physical Biology. Vol. 12 (5), p. artikel nr 056001-
Journal article
2014

A filter-flow perspective of haematogenous metastasis offers a non-genetic paradigm for personalised cancer therapy

J.G. Scott, A.G. Fletcher, P.K. Maini et al
European Journal of Cancer. Vol. 50 (17), p. 3068-3075
Journal article
2013

Mathematical modeling of the metastatic process

J.G. Scott, Philip Gerlee, D. Basanta et al
Experimental Metastasis: Modeling and Analysis, p. 189-208
Book chapter
2013

Comparative drug pair screening across multiple glioblastoma cell lines reveals novel drug-drug interactions

L. Schmidt, T. Kling, N. Monsefi et al
Neuro-Oncology. Vol. 15 (11), p. 1469-1478
Journal article
2013

A mathematical model of tumour self-seeding reveals secondary metastatic deposits as drivers of primary tumour growth

J. G. Scott, D. Basanta, A. R. A. Anderson et al
Journal of the Royal Society Interface. Vol. 10 (82), p. Art. no. 20130011-
Journal article
2013

Searching for Synergies: Matrix Algebraic Approaches for Efficient Pair Screening

Philip Gerlee, Linnéa Schmidt, Naser Monsefi et al
PLoS ONE. Vol. 8 (7), p. Art. no. e68598-
Journal article
2013

Cross-Feeding Dynamics Described by a Series Expansion of the Replicator Equation

Torbjörn Lundh, Philip Gerlee
Bulletin of Mathematical Biology. Vol. 75 (5), p. 709-724
Journal article
2013

The Model Muddle: In Search of Tumor Growth Laws

Philip Gerlee
Cancer Research. Vol. 73 (8), p. 2407-2411
Review article
2012

Effect of space in the game “war of attrition”

Philip Gerlee, Torbjörn Lundh
Physical Review E. Vol. 85 (4), p. Art. no. 041115-
Journal article
2012

Vetenskapliga modeller

Philip Gerlee, Torbjörn Lundh
Book
2012

The Impact of Phenotypic Switching on Glioblastoma Growth and Invasion

Philip Gerlee, Sven Nelander
PLoS Computational Biology. Vol. 8 (6)
Journal article
2011

Evolving homeostatic tissue using genetic algorithms

Philip Gerlee, D. Basanta, A. R. A. Anderson
Progress in Biophysics and Molecular Biology. Vol. 106 (2), p. 414-425
Journal article
2011

Structural correlations in bacterial metabolic networks

Sebastian Bernhardsson, Philip Gerlee, Ludvig Lizana
BMC Evolutionary Biology. Vol. 11 (20)
Journal article
2011

Urdar - an artificial ecology platform

Philip Gerlee, Torbjörn Lundh
ECAL 2011: The 11th European Conference on Artificial Life
Paper in proceeding
2010

Evolving Homeostatic Tissue Using Genetic Algorithms

Philip Gerlee, David Basanta, A. R. A. Anderson
Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems, p. 512-514
Paper in proceeding
2010

Evolution, regulation and disruption of homeostasis and its role in carcinogenesis

Alexander Anderson, David Basanta, Philip Gerlee et al
Multiscale Cancer Modeling, p. 1-30
Book chapter
2010

Rock-scissor-paper dynamics in a digital ecology

Philip Gerlee, Torbjörn Lundh
12th International Conference on the Synthesis and Simulation of Living Systems: Artificial Life XII, ALIFE 2010; Odense; Denmark; 19 August 2010 through 23 August 2010, p. 285-295
Paper in proceeding
2010

Diffusion-limited tumour growth: Simulations and analysis.

Philip Gerlee, A. R. A. Anderson
Mathematical Biosciences and Engineering. Vol. 7 (2), p. 385-400
Journal article
2010

Productivity and diversity in a cross-feeding population of digital organisms

Philip Gerlee, Torbjörn Lundh
Evolution. Vol. 64 (9), p. 2716-2730
Journal article
2010

Weak Emergence and Complexity

Henrik Thorén, Philip Gerlee
Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems, p. 879-887
Paper in proceeding
2009

Gene divergence and pathway duplication in the metabolic network of yeast and digital organisms

Philip Gerlee, Torbjörn Lundh, B. Zhang et al
Journal of the Royal Society Interface. Vol. 6 (41), p. 1233-1245
Journal article
2008

The Emergence of Overlapping Scale-free Genetic Architecture in

Philip Gerlee, Torbjörn Lundh
Artificial Life. Vol. 14 (3), p. 265-275
Journal article
2005

The Genetic coding style of digital organisms

Philip Gerlee, Torbjörn Lundh
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 3630, p. 854-863
Paper in proceeding

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Showing 6 research projects

2023–2024

Stärkt civil- och militär förmåga att analysera och modellera effekterna av en kris inom folkhälsoområdet

Philip Gerlee Applied Mathematics and Statistics
Public Health Agency of Sweden

2023–2025

Predicting an uncertain future: improving the utility of computational models during a pandemic

Philip Gerlee Applied Mathematics and Statistics
Torbjörn Lundh Applied Mathematics and Statistics
Swedish Research Council (VR)

2 publications exist
2022–2026

Systembiologiska studier av invasivt glioblastom

Philip Gerlee Applied Mathematics and Statistics
Swedish Research Council (VR)

1 publication exists
2019–2021

Focus on glioblastoma: using patient-derived cell lines to decipher tumour expansion and evaluate new treatments

Philip Gerlee Applied Mathematics and Statistics
Rebecka Jörnsten Applied Mathematics and Statistics
Swedish Foundation for Strategic Research (SSF)

3 publications exist
2015–2018

Extension of homogenisation techniques for multicellular systems

Philip Gerlee Applied Mathematics and Statistics
Swedish Research Council (VR)

1 publication exists
2014–2019

Hierarchical mixed effects modelling of dynamical systems

Bernt Wennberg Mathematical Sciences
Martin Adiels Mathematics
Philip Gerlee Applied Mathematics and Statistics
Torbjörn Lundh Applied Mathematics and Statistics
Swedish Foundation for Strategic Research (SSF)

4 publications exist
There might be more projects where Philip Gerlee participates, but you have to be logged in as a Chalmers employee to see them.