Philip Gerlee

Forskarassistent at Chalmers, Mathematical Sciences, Applied Mathematics and Statistics

My main research interest is mathematical biology, in particular cancer modelling. I am also interested in mathematical aspects of evolution and ecology, such as the evolution of bacterial consortia and applications of game theory to biology.

Source: chalmers.se

Projects

2014–2019

Hierarchical mixed effects modelling of dynamical systems

Bernt Wennberg Mathematical Sciences
Martin Adiels Mathematics
Philip Gerlee Applied Mathematics and Statistics
Torbjörn Lundh Applied Mathematics and Statistics
Swedish Foundation for Strategic Research (SSF)

2015–2018

Extension of homogenisation techniques for multicellular systems

Philip Gerlee Applied Mathematics and Statistics
Swedish Research Council (VR)

There might be more projects where Philip Gerlee participates, but you have to be logged in as a Chalmers employee to see them.

Publications

2017

Extinction rates in tumour public goods games

Philip Gerlee, P. M. Altrock
Journal of the Royal Society Interface. Vol. 14 (134)
Journal article
2017

The Influence of Cellular Characteristics on the Evolution of Shape Homeostasis

Philip Gerlee, D. Basanta, A. R. A. Anderson
Artificial Life. Vol. 23 (3), p. 424-448
Journal article
2016

Travelling wave analysis of a mathematical model of glioblastoma growth

Philip Gerlee, Sven Nelander
Mathematical Biosciences. Vol. 276, p. 75-81
Journal article
2016

Estimating the probability of coexistence in cross-feeding communities

Björn Vessman, Philip Gerlee, Torbjörn Lundh
Journal of Theoretical Biology. Vol. 408 (7), p. 13-21
Journal article
2016

Scientific Models

Philip Gerlee, Torbjörn Lundh
, p. 1-96
Book
2015

Complexity and stability in growing cancer cell populations

Philip Gerlee, P. M. Altrock
Proceedings of the National Academy of Sciences of the United States of America. Vol. 112 (21), p. E2742-E2743
Magazine article
2015

The evolution of carrying capacity in constrained and expanding tumour cell populations

Philip Gerlee, A. R. A. Anderson
Physical Biology. Vol. 12 (5), p. artikel nr 056001-
Journal article
2015

Bridging scales in cancer progression: Mapping genotype to phenotype using neural networks

Philip Gerlee, Eunjung Kim, Alexander Anderson
Seminars in Cancer Biology. Vol. 30, p. 30-41
Journal article
2014

A filter-flow perspective of haematogenous metastasis offers a non-genetic paradigm for personalised cancer therapy

J.G. Scott, A.G. Fletcher, P.K. Maini et al
European Journal of Cancer. Vol. 50 (17), p. 3068-3075
Journal article
2013

The Model Muddle: In Search of Tumor Growth Laws

Philip Gerlee
Cancer Research. Vol. 73 (8), p. 2407-2411
Journal article
2013

Cross-Feeding Dynamics Described by a Series Expansion of the Replicator Equation

Torbjörn Lundh, Philip Gerlee
Bulletin of Mathematical Biology. Vol. 75 (5), p. 709-724
Journal article
2013

Mathematical modeling of the metastatic process

J.G. Scott, Philip Gerlee, D. Basanta et al
Experimental Metastasis: Modeling and Analysis, p. 189-208
Chapter in monograph, book - peer reviewed
2013

Comparative drug pair screening across multiple glioblastoma cell lines reveals novel drug-drug interactions

L. Schmidt, T. Kling, N. Monsefi et al
Neuro-Oncology. Vol. 15 (11), p. 1469-1478
Journal article
2013

A mathematical model of tumour self-seeding reveals secondary metastatic deposits as drivers of primary tumour growth

J. G. Scott, D. Basanta, A. R. A. Anderson et al
Journal of the Royal Society Interface. Vol. 10 (82), p. Art. no. 20130011-
Journal article
2013

Searching for Synergies: Matrix Algebraic Approaches for Efficient Pair Screening

Philip Gerlee, Linnéa Schmidt, Naser Monsefi et al
PLoS ONE. Vol. 8 (7), p. Art. no. e68598-
Journal article
2012

Vetenskapliga modeller

Philip Gerlee, Torbjörn Lundh
Book
2012

Effect of space in the game “war of attrition”

Philip Gerlee, Torbjörn Lundh
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. Vol. 85 (4), p. Art. no. 041115-
Journal article
2012

The Impact of Phenotypic Switching on Glioblastoma Growth and Invasion

Philip Gerlee, Sven Nelander
PLoS Computational Biology. Vol. 8 (6)
Journal article
2011

Evolving homeostatic tissue using genetic algorithms

Philip Gerlee, D. Basanta, A. R. A. Anderson
Progress in Biophysics and Molecular Biology. Vol. 106 (2), p. 414-425
Journal article
2011

Structural correlations in bacterial metabolic networks

Sebastian Bernhardsson, Philip Gerlee, Ludvig Lizana
BMC Evolutionary Biology. Vol. 11 (20)
Journal article
2010

Evolution, regulation and disruption of homeostasis and its role in carcinogenesis

Alexander Anderson, David Basanta, Philip Gerlee et al
Multiscale Cancer Modeling, p. 384-
Chapter in monograph, book - peer reviewed
2010

Weak Emergence and Complexity

Henrik Thorén, Philip Gerlee
Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems, p. 879-887
Paper in proceedings
2010

Productivity and diversity in a cross-feeding population of digital organisms

Philip Gerlee, Torbjörn Lundh
Evolution. Vol. 64 (9), p. 2716-2730
Journal article
2010

Evolving Homeostatic Tissue Using Genetic Algorithms

Philip Gerlee, David Basanta, A. R. A. Anderson
Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems, p. 512-514
Paper in proceedings
2010

Diffusion-limited tumour growth: Simulations and analysis.

Philip Gerlee, A. R. A. Anderson
Mathematical Biosciences and Engineering. Vol. 7 (2), p. 385-400
Journal article
2010

Rock-scissor-paper dynamics in a digital ecology

Philip Gerlee, Torbjörn Lundh
12th International Conference on the Synthesis and Simulation of Living Systems: Artificial Life XII, ALIFE 2010; Odense; Denmark; 19 August 2010 through 23 August 2010, p. 285-295
Paper in proceedings
2009

Gene divergence and pathway duplication in the metabolic network of yeast and digital organisms

Philip Gerlee, Torbjörn Lundh, B. Zhang et al
Journal of the Royal Society Interface. Vol. 6 (41), p. 1233-1245
Journal article
2008

The Emergence of Overlapping Scale-free Genetic Architecture in

Philip Gerlee, Torbjörn Lundh
Artificial Life. Vol. 14 (3), p. 265-275
Journal article
2005

The Genetic coding style of digital organisms

Philip Gerlee, Torbjörn Lundh
Lecture Notes in Computer Science. Vol. 3630, p. 854-863
Paper in proceedings