Boyang Ji

Visar 45 publikationer

2023

Whole-genome sequencing reveals high-risk clones of Pseudomonas aeruginosa in Guangdong, China

Yonggang Zhao, Dingqiang Chen, Boyang Ji et al
Frontiers in Microbiology. Vol. 14
Artikel i vetenskaplig tidskrift
2022

Dataset for suppressors of amyloid-beta toxicity and their functions in recombinant protein production in yeast

Xin Chen, Xiaowei Li, Boyang Ji et al
Data in Brief. Vol. 42
Artikel i vetenskaplig tidskrift
2022

Mapping of Nonhomologous End Joining-Mediated Integration Facilitates Genome-Scale Trackable Mutagenesis in Yarrowia lipolytica

Xiaoqin Liu, Mengmeng Liu, Jin Zhang et al
ACS Synthetic Biology. Vol. 11 (1), p. 216-227
Artikel i vetenskaplig tidskrift
2022

Impairment of gut microbial biotin metabolism and host biotin status in severe obesity: effect of biotin and prebiotic supplementation on improved metabolism

Eugeni Belda, Lise Voland, Valentina Tremaroli et al
Gut. Vol. 71 (12), p. 2463-2480
Artikel i vetenskaplig tidskrift
2021

Performance of Regression Models as a Function of Experiment Noise

Gang Li, Jan Zrimec, Boyang Ji et al
Bioinformatics and Biology Insights. Vol. 15
Artikel i vetenskaplig tidskrift
2021

Metabolic Alterations in Older Women With Low Bone Mineral Density Supplemented With Lactobacillus reuteri

Peishun Li, Daniel Sundh, Boyang Ji et al
JBMR Plus. Vol. 5 (4)
Artikel i vetenskaplig tidskrift
2021

Cold adaptation in drylands: transcriptomic insights into cold-stressed Nostoc flagelliforme and characterization of a hypothetical gene with cold and nitrogen stress tolerance

Xiang Gao, Zhaoxia Zhu, Haiyan Xu et al
Environmental Microbiology. Vol. 23 (2), p. 713-727
Artikel i vetenskaplig tidskrift
2021

Developments in Fatty Acid-Derived Insect Pheromone Production Using Engineered Yeasts

Xiaoling Zhang, Qin Miao, Xia Xu et al
Frontiers in Microbiology. Vol. 12
Reviewartikel
2021

Engineering yeast metabolism for the discovery and production of polyamines and polyamine analogues

Jiufu Qin, Anastasia Krivoruchko, Boyang Ji et al
Nature Catalysis. Vol. 4 (6), p. 498-509
Artikel i vetenskaplig tidskrift
2021

Microbial profiling identifies potential key drivers in gastric cancer patients

Yonghong Li, Jia Wang, Mengge Wang et al
Biotechnology and Biotechnological Equipment. Vol. 35 (1), p. 496-503
Artikel i vetenskaplig tidskrift
2021

Advances in the Relationships Between Cow’s Milk Protein Allergy and Gut Microbiota in Infants

Yudie Yang, Xiaoqi Li, Ying Yang et al
Frontiers in Microbiology. Vol. 12
Reviewartikel
2021

Draft genome sequences of five fungal strains isolated from Kefir

Simonas Marcisauskas, Yongkyu Kim, Sonja Blasche et al
Microbiology Resource Announcements. Vol. 10 (21)
Artikel i vetenskaplig tidskrift
2021

Genome-scale insights into the metabolic versatility of Limosilactobacillus reuteri

Hao Luo, Peishun Li, Hao Wang et al
BMC Biotechnology. Vol. 21 (1)
Artikel i vetenskaplig tidskrift
2021

Exploring Gut Microbiota in Patients with Colorectal Disease Based on 16S rRNA Gene Amplicon and Shallow Metagenomic Sequencing

Yuanfeng Liu, Xiang Li, Yudie Yang et al
Frontiers in Molecular Biosciences. Vol. 8
Artikel i vetenskaplig tidskrift
2021

Bayesian genome scale modelling identifies thermal determinants of yeast metabolism

Gang Li, Yating Hu, Jan Zrimec et al
Nature Communications. Vol. 12 (1)
Artikel i vetenskaplig tidskrift
2021

Editorial: Engineering Yeast to Produce Plant Natural Products

Yongjun Wei, Boyang Ji, R. Ledesma-Amaro et al
Frontiers in Bioengineering and Biotechnology. Vol. 9
Övrig text i vetenskaplig tidskrift
2021

CODY enables quantitatively spatiotemporal predictions on in vivo gut microbial variability induced by diet intervention

Jun Geng, Boyang Ji, Gang Li et al
Proceedings of the National Academy of Sciences of the United States of America. Vol. 118 (13)
Artikel i vetenskaplig tidskrift
2021

Combinatorial, additive and dose-dependent drug–microbiome associations

Sofia K. Forslund, Rima Chakaroun, Maria Zimmermann-Kogadeeva et al
Nature. Vol. 600 (7889), p. 500-505
Artikel i vetenskaplig tidskrift
2021

Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection

Hongzhong Lu, Feiran Li, Le Yuan et al
Molecular Systems Biology. Vol. 17 (10)
Artikel i vetenskaplig tidskrift
2020

Integrated Metabolic Modeling, Culturing, and Transcriptomics Explain Enhanced Virulence of Vibrio cholerae during Coinfection with Enterotoxigenic Escherichia coli

Alyaa M. Abdel-Haleem, Vaishnavi Ravikumar, Boyang Ji et al
mSystems. Vol. 5 (5)
Artikel i vetenskaplig tidskrift
2020

Meta-analysis of the gut microbiota in predicting response to cancer immunotherapy in metastatic melanoma

Angelo Limeta, Boyang Ji, Max Levin et al
JCI Insight. Vol. 5 (23)
Artikel i vetenskaplig tidskrift
2020

Advances in Metabolic Engineering of Saccharomyces cerevisiae for Cocoa Butter Equivalent Production

Mengge Wang, Yongjun Wei, Boyang Ji et al
Frontiers in Bioengineering and Biotechnology. Vol. 8
Reviewartikel
2020

Systems Biology of Gastric Cancer: Perspectives on the Omics-Based Diagnosis and Treatment

Xiao Jing Shi, Yongjun Wei, Boyang Ji
Frontiers in Molecular Biosciences. Vol. 7
Reviewartikel
2020

Metabolic engineering for increased lipid accumulation in Yarrowia lipolytica – A Review

Jinpeng Wang, R. Ledesma-Amaro, Yongjun Wei et al
Bioresource Technology. Vol. 313
Reviewartikel
2019

Comparative Transcriptome Analysis Shows Conserved Metabolic Regulation during Production of Secondary Metabolites in Filamentous Fungi

Jens Christian Froslev Nielsen, Sylvain Prigent, Sietske Grijseels et al
mSystems. Vol. 4 (2)
Artikel i vetenskaplig tidskrift
2019

Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model

Simonas Marcisauskas, Boyang Ji, Jens B Nielsen
BMC Bioinformatics. Vol. 20 (1)
Artikel i vetenskaplig tidskrift
2019

Carbohydrate active enzymes are affected by diet transition from milk to solid food in infant gut microbiota

Ling Qun Ye, Promi Das, Peishun Li et al
FEMS microbiology ecology. Vol. 95 (11)
Artikel i vetenskaplig tidskrift
2019

Profiling of Small Molecular Metabolites in Nostoc flagelliforme during Periodic Desiccation

Xiang Gao, Bin Liu, Boyang Ji
Marine Drugs. Vol. 17 (5)
Artikel i vetenskaplig tidskrift
2019

Metagenomic analysis of bile salt biotransformation in the human gut microbiome

Promi Das, Simonas Marcisauskas, Boyang Ji et al
BMC Genomics. Vol. 20 (1)
Artikel i vetenskaplig tidskrift
2019

Modelling approaches for studying the microbiome

Manish Kumar, Boyang Ji, Karsten Zengler et al
Nature Microbiology. Vol. 4 (8), p. 1253-1267
Reviewartikel
2018

Serine/Threonine Protein Kinases from Bacteria, Archaea and Eukarya Share a Common Evolutionary Origin Deeply Rooted in the Tree of Life

Ivan Andreas Stancik, Martin Sebastijan Šestak, Boyang Ji et al
Journal of Molecular Biology. Vol. 430 (1), p. 27-32
Artikel i vetenskaplig tidskrift
2018

Gut microbiota dysbiosis is associated with malnutrition and reduced plasma amino acid levels: Lessons from genome-scale metabolic modeling

Manish Kumar, Boyang Ji, Parizad Babaei et al
Metabolic Engineering. Vol. 49, p. 128-142
Artikel i vetenskaplig tidskrift
2018

In vitro co-cultures of human gut bacterial species as predicted from co-occurrence network analysis

Promi Das, Boyang Ji, P. Kovatcheva-Datchary et al
PLoS ONE. Vol. 13 (3)
Artikel i vetenskaplig tidskrift
2018

Challenges in modeling the human gut microbiome

Parizad Babaei, Saeed Shoaie, Boyang Ji et al
Nature Biotechnology. Vol. 36 (8), p. 682-686
Övrig text i vetenskaplig tidskrift
2017

Interplay of Energetics and ER Stress Exacerbates Alzheimer's Amyloid-beta (A beta) Toxicity in Yeast

Xin Chen, Mark Bisschops, Nisha Rani Agarwal et al
Frontiers in Molecular Neuroscience. Vol. 10
Artikel i vetenskaplig tidskrift
2017

Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species

Jens Christian Froslev Nielsen, S. Grijseels, Sylvain Prigent et al
Nature Microbiology. Vol. 2 (6)
Artikel i vetenskaplig tidskrift
2017

Conversion of Glycerol to 3-Hydroxypropanoic Acid by Genetically Engineered Bacillus subtilis

Aida Kalantari, Tao Chen, Boyang Ji et al
Frontiers in Microbiology. Vol. 8 (APR)
Artikel i vetenskaplig tidskrift
2017

The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria

Boyang Ji, S. D. Zhang, W. J. Zhang et al
Environmental Microbiology. Vol. 19 (3), p. 1103-1119
Artikel i vetenskaplig tidskrift
2017

In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria

Olaa Motwalli, Magbubah Essack, Boris R. Jankovic et al
BMC Genomics. Vol. 18 (1)
Artikel i vetenskaplig tidskrift
2016

Human gut microbiota and healthy aging: Recent developments and future prospective

Manish Kumar, Parizad Babaei, Boyang Ji et al
Nutrition and healthy aging. Vol. 4 (1), p. 3-16
Artikel i vetenskaplig tidskrift
2015

New insight into the gut microbiome through metagenomics

Boyang Ji, Jens B Nielsen
Advances in Genomics and Genetics. Vol. 5, p. 77-91
Artikel i vetenskaplig tidskrift
2015

Logical transformation of genome-scale metabolic models for gene level applications and analysis

C. Zhang, Boyang Ji, Adil Mardinoglu et al
Bioinformatics. Vol. 31 (14), p. 2324-2331
Artikel i vetenskaplig tidskrift
2015

From next-generation sequencing to systematic modeling of the gut microbiome

Boyang Ji, Jens B Nielsen
Frontiers in Genetics. Vol. 6 (JUN)
Reviewartikel
2014

Evolution of Bacterial Protein-Tyrosine Kinases and Their Relaxed Specificity Toward Substrates

Lei Shi, Boyang Ji, L. Kolar-Znika et al
Genome Biology and Evolution. Vol. 6 (4), p. 800-817
Artikel i vetenskaplig tidskrift
2014

Insights into the pathways of iron- and sulfur-oxidation, and biofilm formation from the chemolithotrophic acidophile Acidithiobacillus ferrivorans CF27

E. Talla, S. Hedrich, S. Mangenot et al
Research in Microbiology. Vol. 165 (9), p. 753-760
Artikel i vetenskaplig tidskrift

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