Boyang Ji

2021

Metabolic Alterations in Older Women With Low Bone Mineral Density Supplemented With Lactobacillus reuteri

2021

CODY enables quantitatively spatiotemporal predictions on in vivo gut microbial variability induced by diet intervention

2021

Bayesian genome scale modelling identifies thermal determinants of yeast metabolism

2021

Microbial profiling identifies potential key drivers in gastric cancer patients

2020

Meta-analysis of the gut microbiota in predicting response to cancer immunotherapy in metastatic melanoma

2020

Integrated Metabolic Modeling, Culturing, and Transcriptomics Explain Enhanced Virulence of Vibrio cholerae during Coinfection with Enterotoxigenic Escherichia coli

2020

Systems Biology of Gastric Cancer: Perspectives on the Omics-Based Diagnosis and Treatment

2020

Advances in Metabolic Engineering of Saccharomyces cerevisiae for Cocoa Butter Equivalent Production

Cold adaptation in drylands: transcriptomic insights into cold-stressed Nostoc flagelliforme and characterization of a hypothetical gene with cold and nitrogen stress tolerance

Metabolic engineering for increased lipid accumulation in Yarrowia lipolytica – A Review

Modelling approaches for studying the microbiome

Profiling of Small Molecular Metabolites in Nostoc flagelliforme during Periodic Desiccation

2019

Metagenomic analysis of bile salt biotransformation in the human gut microbiome

Comparative Transcriptome Analysis Shows Conserved Metabolic Regulation during Production of Secondary Metabolites in Filamentous Fungi

Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model

Carbohydrate active enzymes are affected by diet transition from milk to solid food in infant gut microbiota

Gut microbiota dysbiosis is associated with malnutrition and reduced plasma amino acid levels: Lessons from genome-scale metabolic modeling

Serine/Threonine Protein Kinases from Bacteria, Archaea and Eukarya Share a Common Evolutionary Origin Deeply Rooted in the Tree of Life

2018

In vitro co-cultures of human gut bacterial species as predicted from co-occurrence network analysis

Challenges in modeling the human gut microbiome

2017

Conversion of Glycerol to 3-Hydroxypropanoic Acid by Genetically Engineered Bacillus subtilis

2017

In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria

The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria

2017

Interplay of Energetics and ER Stress Exacerbates Alzheimer's Amyloid-beta (A beta) Toxicity in Yeast

Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species

Human gut microbiota and healthy aging: Recent developments and future prospective

New insight into the gut microbiome through metagenomics

Logical transformation of genome-scale metabolic models for gene level applications and analysis

From next-generation sequencing to systematic modeling of the gut microbiome

Insights into the pathways of iron- and sulfur-oxidation, and biofilm formation from the chemolithotrophic acidophile Acidithiobacillus ferrivorans CF27

Evolution of Bacterial Protein-Tyrosine Kinases and Their Relaxed Specificity Toward Substrates