Boyang Ji

Gästforskare vid Systembiologi
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Visar 26 publikationer

2020

Integrated Metabolic Modeling, Culturing, and Transcriptomics Explain Enhanced Virulence of Vibrio cholerae during Coinfection with Enterotoxigenic Escherichia coli

Alyaa M. Abdel-Haleem, Vaishnavi Ravikumar, Boyang Ji et al
MSYSTEMS. Vol. 5 (5)
Artikel i vetenskaplig tidskrift
2020

Systems Biology of Gastric Cancer: Perspectives on the Omics-Based Diagnosis and Treatment

Xiao Jing Shi, Yongjun Wei, Boyang Ji
Frontiers in Molecular Biosciences. Vol. 7
Reviewartikel
2020

Advances in Metabolic Engineering of Saccharomyces cerevisiae for Cocoa Butter Equivalent Production

Mengge Wang, Yongjun Wei, Boyang Ji et al
Frontiers in Bioengineering and Biotechnology. Vol. 8
Reviewartikel
2020

Cold adaptation in drylands: transcriptomic insights into cold-stressed Nostoc flagelliforme and characterization of a hypothetical gene with cold and nitrogen stress tolerance

Xiang Gao, Zhaoxia Zhu, Haiyan Xu et al
Environmental Microbiology. Vol. In Press
Artikel i vetenskaplig tidskrift
2020

Metabolic engineering for increased lipid accumulation in Yarrowia lipolytica – A Review

Jinpeng Wang, R. Ledesma-Amaro, Yongjun Wei et al
Bioresource Technology. Vol. 313
Reviewartikel
2019

Modelling approaches for studying the microbiome

Manish Kumar, Boyang Ji, Karsten Zengler et al
Nature Microbiology. Vol. 4 (8), p. 1253-1267
Reviewartikel
2019

Profiling of Small Molecular Metabolites in Nostoc flagelliforme during Periodic Desiccation

Xiang Gao, Bin Liu, Boyang Ji
Marine Drugs. Vol. 17 (5)
Artikel i vetenskaplig tidskrift
2019

Metagenomic analysis of bile salt biotransformation in the human gut microbiome

Promi Das, Simonas Marcisauskas, Boyang Ji et al
BMC Genomics
Artikel i vetenskaplig tidskrift
2019

Comparative Transcriptome Analysis Shows Conserved Metabolic Regulation during Production of Secondary Metabolites in Filamentous Fungi

Jens Christian Froslev Nielsen, Sylvain Prigent, Sietske Grijseels et al
MSYSTEMS. Vol. 4 (2)
Artikel i vetenskaplig tidskrift
2019

Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model

Simonas Marcisauskas, Boyang Ji, Jens B Nielsen
BMC Bioinformatics. Vol. 20 (1)
Artikel i vetenskaplig tidskrift
2019

Carbohydrate active enzymes are affected by diet transition from milk to solid food in infant gut microbiota

Ling Qun Ye, Promi Das, Peishun Li et al
FEMS microbiology ecology. Vol. 95 (11)
Artikel i vetenskaplig tidskrift
2018

Gut microbiota dysbiosis is associated with malnutrition and reduced plasma amino acid levels: Lessons from genome-scale metabolic modeling

Manish Kumar, Boyang Ji, Parizad Babaei et al
Metabolic Engineering. Vol. 49, p. 128-142
Artikel i vetenskaplig tidskrift
2018

Serine/Threonine Protein Kinases from Bacteria, Archaea and Eukarya Share a Common Evolutionary Origin Deeply Rooted in the Tree of Life

Ivan Andreas Stancik, Martin Sebastijan Šestak, Boyang Ji et al
Journal of Molecular Biology. Vol. 430 (1), p. 27-32
Artikel i vetenskaplig tidskrift
2018

In vitro co-cultures of human gut bacterial species as predicted from co-occurrence network analysis

Promi Das, Boyang Ji, P. Kovatcheva-Datchary et al
PLoS ONE. Vol. 13 (3)
Artikel i vetenskaplig tidskrift
2018

Challenges in modeling the human gut microbiome

Parizad Babaei, Saeed Shoaie, Boyang Ji et al
Nature Biotechnology. Vol. 36 (8), p. 682-686
Inledande text i tidskrift
2017

Conversion of Glycerol to 3-Hydroxypropanoic Acid by Genetically Engineered Bacillus subtilis

Aida Kalantari, Tao Chen, Boyang Ji et al
Frontiers in Microbiology. Vol. 8 (APR)
Artikel i vetenskaplig tidskrift
2017

In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria

Olaa Motwalli, Magbubah Essack, Boris R. Jankovic et al
BMC Genomics. Vol. 18 (1)
Artikel i vetenskaplig tidskrift
2017

The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria

Boyang Ji, S. D. Zhang, W. J. Zhang et al
Environmental Microbiology. Vol. 19 (3), p. 1103-1119
Artikel i vetenskaplig tidskrift
2017

Interplay of Energetics and ER Stress Exacerbates Alzheimer's Amyloid-beta (A beta) Toxicity in Yeast

Xin Chen, Mark Bisschops, Nisha Rani Agarwal et al
Frontiers in Molecular Neuroscience. Vol. 10
Artikel i vetenskaplig tidskrift
2017

Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species

Jens Christian Froslev Nielsen, S. Grijseels, Sylvain Prigent et al
Nature Microbiology. Vol. 2 (6)
Artikel i vetenskaplig tidskrift
2016

Human gut microbiota and healthy aging: Recent developments and future prospective

Manish Kumar, Parizad Babaei, Boyang Ji et al
Nutrition and healthy aging. Vol. 4 (1), p. 3-16
Artikel i vetenskaplig tidskrift
2015

New insight into the gut microbiome through metagenomics

Boyang Ji, Jens B Nielsen
Advances in Genomics and Genetics. Vol. 5, p. 77-91
Artikel i vetenskaplig tidskrift
2015

Logical transformation of genome-scale metabolic models for gene level applications and analysis

C. Zhang, Boyang Ji, Adil Mardinoglu et al
Bioinformatics. Vol. 31 (14), p. 2324-2331
Artikel i vetenskaplig tidskrift
2015

From next-generation sequencing to systematic modeling of the gut microbiome

Boyang Ji, Jens B Nielsen
Frontiers in Genetics. Vol. 6 (JUN)
Artikel i vetenskaplig tidskrift
2014

Insights into the pathways of iron- and sulfur-oxidation, and biofilm formation from the chemolithotrophic acidophile Acidithiobacillus ferrivorans CF27

E. Talla, S. Hedrich, S. Mangenot et al
Research in Microbiology. Vol. 165 (9), p. 753-760
Artikel i vetenskaplig tidskrift
2014

Evolution of Bacterial Protein-Tyrosine Kinases and Their Relaxed Specificity Toward Substrates

Lei Shi, Boyang Ji, L. Kolar-Znika et al
Genome Biology and Evolution. Vol. 6 (4), p. 800-817
Artikel i vetenskaplig tidskrift

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