Adil Mardinoglu

Forskarassistent vid Chalmers, Biologi och bioteknik, Systembiologi

Adil tillhör gruppen systembiologi. Se den engelska sidan för mer information.

Källa: chalmers.se

Visar 70 publikationer

2018

Metabolic Network-Based Identification and Prioritization o f Anticancer Targets Based on Expression Data in Hepatocellular Carcinoma

Gholamreza Bidkhori, Rui Benfeitas, Ezgi Elmas et al
Frontiers in Physiology. Vol. 9
Artikel i vetenskaplig tidskrift
2018

Broad Views of Non-alcoholic Fatty Liver Disease

Adil Mardinoglu, Mathias Uhlen, Jan Borén
Cell Systems. Vol. 6 (1), p. 37-51.e9
Inledande text i tidskrift
2018

Elevated Plasma Levels of 3-Hydroxyisobutyric Acid Are Associated With Incident Type 2 Diabetes

Adil Mardinoglu, Silvia Gogg, Luca A. Lotta et al
EBioMedicine. Vol. 27, p. 151-155
Artikel i vetenskaplig tidskrift
2018

Drug Repositioning for Effective Prostate Cancer Treatment

Beste Turanli, Morten Grötli, Jan Boren et al
Frontiers in Physiology. Vol. 9
Artikel i vetenskaplig tidskrift
2018

Letter: dose-response analysis revealed closer relationship between obesity and perioperative outcomes in patients after liver transplantation

Zhengtao Liu, Adil Mardinoglu, S. P. Que
Alimentary Pharmacology and Therapeutics. Vol. 47 (2), p. 310-312
Inledande text i tidskrift
2018

Systems biology in hepatology: Approaches and applications

Adil Mardinoglu, Jan Borén, Ulf Smith et al
Nature Reviews Gastroenterology and Hepatology. Vol. 15 (6), p. 365-377
Reviewartikel
2018

Understanding the representative gut microbiota dysbiosis in metformin-treated Type 2 diabetes patients using genome-scale metabolic modeling

Dorines Rosario, Rui Benfeitas, G. Bidkhori et al
Frontiers in Physiology. Vol. 9
Artikel i vetenskaplig tidskrift
2018

TCSBN: A database of tissue and cancer specific biological networks

Sunjae Lee, C. Zhang, M. Arif et al
Nucleic Acids Research. Vol. 46 (D1), p. D595-D600
Artikel i vetenskaplig tidskrift
2018

Identification of discriminating metabolic pathways and metabolites in human PBMCs stimulated by various pathogenic agents

Xiang Zhang, Adil Mardinoglu, Leo A.B. Joosten et al
Frontiers in Physiology. Vol. 9 (FEB)
Artikel i vetenskaplig tidskrift
2018

Characterization of different fat depots in NAFLD using inflammation-associated proteome, lipidome and metabolome

Alen Lovric, Marit Granér, Elias Björnson et al
Scientific Reports. Vol. 8 (1)
Artikel i vetenskaplig tidskrift
2018

Combined ASRGL1 and p53 immunohistochemistry as an independent predictor of survival in endometrioid endometrial carcinoma

Jutta Huvila, Teemu D. Laajala, P. H. Edqvist et al
Gynecologic Oncology. Vol. 149 (1), p. 173-180
Artikel i vetenskaplig tidskrift
2017

New challenges to study heterogeneity in cancer redox metabolism

Rui Benfeitas, Mathias Uhlen, Jens B Nielsen et al
Frontiers in Cell and Developmental Biology. Vol. 5 (JUL)
Artikel i vetenskaplig tidskrift
2017

Improving the economics of NASH/NAFLD treatment through the use of systems biology

Jim Bosley, Christofer Boren, Sunjae Lee et al
Drug Discovery Today. Vol. 22 (10), p. 1532-1538
Reviewartikel
2017

The effect of the TM6SF2 E167K variant on liver steatosis and fibrosis in patients with chronic hepatitis C: a meta-analysis

Z. T. Liu, S. P. Que, L. Zhou et al
Scientific Reports. Vol. 7 (1), p. 9273-
Artikel i vetenskaplig tidskrift
2017

Predicting growth of the healthy infant using a genome scale metabolic model.

Avlant Nilsson, Adil Mardinoglu, Jens B Nielsen
NPJ systems biology and applications. Vol. 3, p. 3-
Artikel i vetenskaplig tidskrift
2017

Rediscussion on Linearity Between Fibrosis Stages and Mortality Risk in Nonalcoholic Fatty Liver Disease Patients

Z. T. Liu, Shuping Que, Adil Mardinoglu
Hepatology. Vol. 66 (4), p. 1357-1358
Artikel i vetenskaplig tidskrift
2017

Personal model-assisted identification of NAD(+) and glutathione metabolism as intervention target in NAFLD

Adil Mardinoglu, Elias Björnson, C. Zhang et al
Molecular Systems Biology. Vol. 13 (3)
Artikel i vetenskaplig tidskrift
2017

Plasma Mannose Levels Are Associated with Incident Type 2 Diabetes and Cardiovascular Disease

Adil Mardinoglu, A. Stancakova, L. A. Lotta et al
Cell Metabolism. Vol. 26 (2), p. 281-283
Artikel i vetenskaplig tidskrift
2017

Network analyses identify liver-specific targets for treating liver diseases

SangWook Lee, C. Zhang, Z. T. Liu et al
Molecular Systems Biology. Vol. 13 (8)
Artikel i vetenskaplig tidskrift
2017

Selection of complementary foods based on optimal nutritional values

Partho Sen, Adil Mardinoglu, Jens B Nielsen
Scientific Reports. Vol. 7 (1), p. Article no 5413 -
Artikel i vetenskaplig tidskrift
2017

A pathology atlas of the human cancer transcriptome

M. Uhlen, C. Zhang, SangWook Lee et al
Science. Vol. 357 (6352), p. 660-+
Artikel i vetenskaplig tidskrift
2017

VIMENTIN DEFICIENCY IN MACROPHAGES INDUCES CD36-MEDIATED INFLAMMATION

Liliana Håversen, Marcus Ståhlman, Lillemor Mattsson Hultén et al
Atherosclerosis. Vol. 263, p. E87-E88
Konferensbidrag (offentliggjort, men ej förlagsutgivet)
2017

Improving the economics of NASH/NAFLD treatment through the use of systems biology

J. Bosley, C. Boren, SangWook Lee et al
Drug Discovery Today. Vol. 22 (10), p. 1532-1538
Artikel i vetenskaplig tidskrift
2017

Mitochondria-related transcriptional signature is downregulated in adipocytes in obesity: a study of young healthy MZ twins

S. Heinonen, M. Muniandy, J. Buzkova et al
Diabetologia. Vol. 60 (1), p. 169-181
Artikel i vetenskaplig tidskrift
2017

AUP1 (Ancient Ubiquitous Protein 1): A Molecular Link Between Hepatic Lipid Mobilization and VLDL Secretion

Adil Mardinoglu, Jan Borén
Arteriosclerosis, Thrombosis, and Vascular Biology. Vol. 37 (4), p. 609-610
Artikel i övriga tidskrifter
2016

Editorial: The Impact of Systems Medicine on Human Health and Disease

Adil Mardinoglu, Jens B Nielsen
Frontiers in Physiology. Vol. 7 (NOV)
Artikel i övriga tidskrifter
2016

Confounding effects of metformin on the human gut microbiome in Type 2 diabetes

Adil Mardinoglu, Jan Borén, Ulf Smith
Cell Metabolism. Vol. 23 (1), p. 10-12
Artikel i vetenskaplig tidskrift
2016

Investigating the Combinatory Effects of Biological Networks on Gene Co-expression

C. Zhang, SangWook Lee, Adil Mardinoglu et al
Frontiers in Physiology. Vol. 7 (MAY)
Artikel i vetenskaplig tidskrift
2016

Transcriptomics resources of human tissues and organs

M. Uhlen, B. M. Hallstrom, C. Lindskog et al
Molecular Systems Biology. Vol. 12 (4)
Artikel i vetenskaplig tidskrift
2016

Adaptive Evolution of Phosphorus Metabolism in Prochlorococcus.

John R Casey, Adil Mardinoglu, Jens B Nielsen et al
mSystems. Vol. 1 (6), p. Article no UNSP e00065 -
Artikel i vetenskaplig tidskrift
2016

Phenotypic and genetic variance: a systems approach to the liver

Adil Mardinoglu, M. Uhlen
Nature Reviews Gastroenterology and Hepatology. Vol. 13 (8), p. 439-440
Artikel i övriga tidskrifter
2016

Integrated Network Analysis Reveals an Association between Plasma Mannose Levels and Insulin Resistance

SangWook Lee, C. Zhang, M. Kilicarslan et al
Cell Metabolism. Vol. 24 (1), p. 172-184
Artikel i vetenskaplig tidskrift
2016

ARAP2 promotes GLUT1-mediated basal glucose uptake through regulation of sphingolipid metabolism

Aditi Chaudhari, Liliana Håversen, Reza Mobini et al
Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. Vol. 1861 (11), p. 1643-1651
Artikel i vetenskaplig tidskrift
2016

Personalized Cardiovascular Disease Prediction and Treatment-A Review of Existing Strategies and Novel Systems Medicine Tools

Elias Björnson, Jan Borén, Adil Mardinoglu
Frontiers in Physiology. Vol. 7 (JAN)
Artikel i vetenskaplig tidskrift
2016

Systems biology analysis of hepatitis C virus infection reveals the role of copy number increases in regions of chromosome 1q in hepatocellular carcinoma metabolism

Ibrahim El-Semman, Adil Mardinoglu, Saeed Shoaie et al
Molecular BioSystems. Vol. 12 (5), p. 1496-1506
Artikel i vetenskaplig tidskrift
2016

Dysregulated signaling hubs of liver lipid metabolism reveal hepatocellular carcinoma pathogenesis

SangWook Lee, Adil Mardinoglu, C. Zhang et al
Nucleic Acids Research. Vol. 44 (12), p. 5529-5539
Artikel i vetenskaplig tidskrift
2016

Integrated Network Modeling for Novel Target Searches and Better Predictive Models

Adil Mardinoglu, J. Bosley
Journal of Pharmacokinetics and Pharmacodynamics. Vol. 43, p. S88-S88
Konferensbidrag (offentliggjort, men ej förlagsutgivet)
2015

The gut microbiota modulates host amino acid and glutathione metabolism in mice

Adil Mardinoglu, Saeed Shoaie, Mattias Bergentall et al
Molecular Systems Biology. Vol. 11 (10), p. Article Number: 834-
Artikel i vetenskaplig tidskrift
2015

Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome

Saeed Shoaie, Pouyan Ghaffari Nouran, P. Kovatcheva-Datchary et al
Cell Metabolism. Vol. 22 (2), p. 320-331
Artikel i vetenskaplig tidskrift
2015

Cancer Metabolism: A Modeling Perspective

Pouyan Ghaffari Nouran, Adil Mardinoglu, Jens B Nielsen
Frontiers in Physiology. Vol. 6 (DEC)
Artikel i vetenskaplig tidskrift
2015

Logical transformation of genome-scale metabolic models for gene level applications and analysis

C. Zhang, Boyang Ji, Adil Mardinoglu et al
Bioinformatics. Vol. 31 (14), p. 2324-2331
Artikel i vetenskaplig tidskrift
2015

Extensive weight loss reveals distinct gene expression changes in human subcutaneous and visceral adipose tissue

Adil Mardinoglu, J. T. Heiker, D. Gartner et al
Scientific Reports. Vol. 5, p. 14841-
Artikel i vetenskaplig tidskrift
2015

Tissue-based map of the human proteome

M. Uhlen, L. Fagerberg, B.M. Hallström et al
Science. Vol. 347 (6220), p. 394-
Artikel i vetenskaplig tidskrift
2015

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling

C. Lindskog, J. Linne, L. Fagerberg et al
BMC Genomics. Vol. 16 (1)
Artikel i vetenskaplig tidskrift
2015

New paradigms for metabolic modeling of human cells

Adil Mardinoglu, Jens B Nielsen
Current Opinion in Biotechnology. Vol. 34, p. 91-97
Artikel i vetenskaplig tidskrift
2015

Stratification of Hepatocellular Carcinoma Patients Based on Acetate Utilization

Elias Björnson, B. Mukhopadhyay, A. Asplund et al
Cell Reports. Vol. 13 (9), p. 2014-2026
Artikel i vetenskaplig tidskrift
2015

Identifying anti-growth factors for human cancer cell lines through genome-scale metabolic modeling

Pouyan Ghaffari Nouran, Adil Mardinoglu, A. Asplund et al
Scientific Reports. Vol. 5, p. Art. no. 8183-
Artikel i vetenskaplig tidskrift
2015

Kinetic Studies to Elucidate Impaired Metabolism of Triglyceride-rich Lipoproteins in Humans.

Martin Adiels, Adil Mardinoglu, Marja-Riitta Taskinen et al
Frontiers in Physiology. Vol. 6 (NOV), p. 342-
Artikel i vetenskaplig tidskrift
2015

Modelling the effect of spion size in a stent assisted magnetic drug targeting system with interparticle interactions

Adil Mardinoglu, P. J. Cregg
The Scientific World Journal. Vol. 2015
Artikel i vetenskaplig tidskrift
2015

Proteome- and Transcriptome-Driven Reconstruction of the Human Myocyte Metabolic Network and Its Use for Identification of Markers for Diabetes

Leif Wigge, C. Scheele, C. Broholm et al
Cell Reports. Vol. 11 (6), p. 921-933
Artikel i vetenskaplig tidskrift
2014

Identification of anticancer drugs for hepatocellular carcinoma through personalized genome-scale metabolic modeling

Rasmus Ågren, Adil Mardinoglu, A. Asplund et al
Molecular Systems Biology. Vol. 10 (3)
Artikel i vetenskaplig tidskrift
2014

Defining the Human Adipose Tissue Proteome To Reveal Metabolic Alterations in Obesity

Adil Mardinoglu, C. Kampf, A. Asplund et al
Journal of Proteome Research. Vol. 13 (11), p. 5106-5119
Artikel i vetenskaplig tidskrift
2014

Toxicogenomics directory of chemically exposed human hepatocytes

Marianna Grinberg, Regina M. Stoeber, K. Edlund et al
Archives of Toxicology. Vol. 88 (12), p. 2261-2287
Artikel i vetenskaplig tidskrift
2014

Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

L. Fagerberg, B. M. Hallstrom, P. Oksvold et al
Molecular and Cellular Proteomics. Vol. 13 (2), p. 397-406
Artikel i vetenskaplig tidskrift
2014

The use of Genome-scale metabolic models for drug target and biomarker identification

Adil Mardinoglu, M. Uhlen, Jens B Nielsen
New Biotechnology. Vol. 31, p. S49-S49
Artikel i övriga tidskrifter
2014

The human liver-specific proteome defined by transcriptomics and antibody-based profiling

C. Kampf, Adil Mardinoglu, L. Fagerberg et al
FASEB Journal. Vol. 28 (7), p. 2901-2914
Artikel i vetenskaplig tidskrift
2014

Defining the human gallbladder proteome by transcriptomics and affinity proteomics

C. Kampf, Adil Mardinoglu, L. Fagerberg et al
Proteomics. Vol. 14 (21-22), p. 2498-2507
Artikel i vetenskaplig tidskrift
2014

Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease

Adil Mardinoglu, Rasmus Ågren, C. Kampf et al
Nature Communications. Vol. 5, p. 11-
Artikel i vetenskaplig tidskrift
2013

Genome-scale modeling of human metabolism - a systems biology approach.

Adil Mardinoglu, Francesco Gatto, Jens B Nielsen
Biotechnology journal. Vol. 8
Artikel i vetenskaplig tidskrift
2013

Integration of clinical data with a genome-scale metabolic model of the human adipocyte

Adil Mardinoglu, Rasmus Ågren, C. Kampf et al
Molecular Systems Biology. Vol. 9 (1), p. 649-
Artikel i vetenskaplig tidskrift
2013

Understanding the interactions between bacteria in the human gut through metabolic modeling

Saeed Shoaie, Fredrik Karlsson, Adil Mardinoglu et al
Scientific Reports. Vol. 3
Artikel i vetenskaplig tidskrift
2012

Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT

Rasmus Ågren, Sergio Velasco, Adil Mardinoglu et al
PLoS Computational Biology (5)
Artikel i vetenskaplig tidskrift
2012

Inclusion of interactions in mathematical modelling of implant assisted magnetic drug targeting

P. J. Cregg, K. Murphy, Adil Mardinoglu
Applied Mathematical Modelling. Vol. 36 (1), p. 1-34
Artikel i vetenskaplig tidskrift
2012

Systems medicine and metabolic modelling

Adil Mardinoglu, Jens B Nielsen
Journal of Internal Medicine. Vol. 271 (2), p. 142-154
Artikel i vetenskaplig tidskrift
2011

Development of artificial neuronal networks for molecular communication

Adil Mardinoglu
Nano Communication Networks. Vol. 2 (2-3), p. 150-160
Artikel i vetenskaplig tidskrift
2011

Artificial backbone neuronal network for nano scale sensors

F. Walsh, N.T. Boyle, Adil Mardinoglu et al
2011 IEEE Conference on Computer Communications Workshops, INFOCOM WKSHPS 2011. Shanghai, 10-15 April 2011, p. 449-454
Paper i proceeding
2011

Theoretical modelling of physiologically stretched vessel in magnetisable stent assisted magnetic drug targetingapplication

Adil Mardinoglu
Journal of Magnetism and Magnetic Materials. Vol. 323 (3-4), p. 324-329
Artikel i vetenskaplig tidskrift
2010

Many particle magnetic dipole–dipole and hydrodynamic interactions in magnetizable stent assisted magnetic drug targeting

Adil Mardinoglu
Journal of Magnetism and Magnetic Materials. Vol. 322 (15), p. 2087-2094
Artikel i vetenskaplig tidskrift
2009

Inclusion of magnetic dipole–dipole and hydrodynamic interactions in implant-assisted magnetic drug targeting

Adil Mardinoglu
Journal of Magnetism and Magnetic Materials. Vol. 321 (23), p. 3893-3898
Artikel i vetenskaplig tidskrift
2008

Calculation of nanoparticle capture efficiency in magnetic drug targeting

Adil Mardinoglu
Journal of Magnetism and Magnetic Materials. Vol. 320 (23), p. 3272-3275
Artikel i vetenskaplig tidskrift

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Visar 1 forskningsprojekt

2014–2018

Integrating Modelling of Metabolism and Signalling towards an Application in Liver Cancer (ERASysAPP - IMOMESIC)

Jens B Nielsen Biologi och bioteknik
Avlant Nilsson Systembiologi
Adil Mardinoglu Systembiologi
Vetenskapsrådet (VR)

Det kan finnas fler projekt där Adil Mardinoglu medverkar, men du måste vara inloggad som anställd på Chalmers för att kunna se dem.